Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02246 ATGTCTTTCATGTGGTTATCTCTTCTAATATGCACGACGCTGATCTTATCAAAGCCTGCTGTTTCTTCCAACATCATCAGGTCTTTGCCTGGGTTTCCAGGTCCCCTTCCTTTCAAATTAGAGACTGGATACATTGGTGTGGGTGAGCATGAAGTTGTGCAGCTATTTTATTACTTCATTGAATCAAAAGGAAATCCAACAGAGGATCCTCCGATACTATGGATGACCGGTGGCCCCGGATGCTCTGCCTTGTGCGGCCTTTGCTTTGAAATAGGCCCTCTCAAGTTTAATATGGTGGACTATAATGGAAGTTTGCCAACATTTTCTCTCAATCCACACTCATGGACTAAGGTTTCAAGTGTTATCTTTATTGATGCCCCTGTTGGCACTGGATTCTCATATTCAACAACCTTGCAAGGGTCCAAGACAACAACAATATCCATGCCCAACATTGTCACCATTTCATTAGAAAGTGGCTGGTGGCTCATCCGAAATTTATTTCTAATCCAGTCTACATTACTGTTATTACATTATGATTATGTTGATGCAGGAAACGAAGCTGGAGAAAAACCAAAAATAAACATGAAAGGATATGTGCTTGGGAACCCAGTAACAGATGTATATATAGACTCCAATTCTAGGATTCCATACGCTCATCACATGGCTCTTATTTCTGATGAACTCTACAAGTCAGCAAAAATGACTTGCAGAGGGGAGTATGTCAGAGTGAAAAAAAGCAATCTACCATGCCAGAAAGATCTCCAAGCTATCTCTGAGGGAATTGCAAACGTCTGGATAAGGTGTAATCGCGACGTATTAACAAGGGAAGTCCAAAGTTCTCTTGCCTATCATCGTTGTCTCAGAACCAAACATTTCCGTGCTCTTATATACAGTGGTGATCATGACATGGCGGTGCCATACTTGGGAACTATCGAATGGATCAATTCTCTGAACTCTACCATTGTGGATGATTGGAGACCTTGGATTGTCAGCAATCAAGTTGCAGGGTATATACGAGAGTACTCCAACAATATCACTTTTGCCACTGTGAAGGCAAGTATATATGTGTGTGTTATTTTTCCAGGGGAATTTTGA 1095 0.4137 MSFMWLSLLICTTLILSKPAVSSNIIRSLPGFPGPLPFKLETGYIGVGEHEVVQLFYYFIESKGNPTEDPPILWMTGGPGCSALCGLCFEIGPLKFNMVDYNGSLPTFSLNPHSWTKVSSVIFIDAPVGTGFSYSTTLQGSKTTTISMPNIVTISLESGWWLIRNLFLIQSTLLLLHYDYVDAGNEAGEKPKINMKGYVLGNPVTDVYIDSNSRIPYAHHMALISDELYKSAKMTCRGEYVRVKKSNLPCQKDLQAISEGIANVWIRCNRDVLTREVQSSLAYHRCLRTKHFRALIYSGDHDMAVPYLGTIEWINSLNSTIVDDWRPWIVSNQVAGYIREYSNNITFATVKASIYVCVIFPGEF. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02246 364 Pfam Serine carboxypeptidase 264 352 IPR001563 GO:0004185|GO:0006508
Seca12g02246 364 Pfam Serine carboxypeptidase 30 144 IPR001563 GO:0004185|GO:0006508
Seca12g02246 364 Pfam Serine carboxypeptidase 184 259 IPR001563 GO:0004185|GO:0006508
Seca12g02246 364 SUPERFAMILY alpha/beta-Hydrolases 26 351 IPR029058 -
Seca12g02246 364 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 353 IPR001563 GO:0004185|GO:0006508
Seca12g02246 364 Gene3D - 282 356 - -
Seca12g02246 364 Gene3D alpha/beta hydrolase 20 168 IPR029058 -
Seca12g02246 364 Gene3D alpha/beta hydrolase 171 281 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02246 Seca-Chr12 30501231 30509181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02246 20 50 Calmodulin-binding Proteins AT2G22960 61.290 1.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02246 K16296 - ath:AT1G73300 328.946