Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02235 ATGCTCTCTGCTCTCCCTCCCTCCGACCCTCTCTTCGGAAACCCATTCTCAGCCTTCGCCGGCAGTTTCACGCCGTGGGATTGCCATGACCTTTTTTCCAGCATCCTTGAACCCACCAACGACCCCAAACCGGTTACCTCGAGTTCCGGTTCTGATGAACCGAACCAAACCCATGAGAAGCCTAAACCGGACCCTGACGAACCGAACCGGGATGTGTCTGTTATGGACGAGCGAAAGCGGCGTCGCATGATATCGAACCGGGAATCGGCCCGGAGGTCAAGGATGCGTAAACAGAGGCACCTAGAGAACCTACGGAACCAGTTGAACAAGTGTAGGATCGAAAACAGGGAACTAAACAACCGATTGCAGTTCATCTTGCATCACTGTGACCGCATACGAACCGAAAACGAATGGCTCCGGTCCGAGCGAACCTTTCTCCGCCAAAAATTGTCCAATTTCACTCAAATTTTGGTTTTGCAACAATTGCAACAACAACCTTTCTCATCATCCCCTGCATGGACATGTAACACCATGGTCATGACAGAATAA 549 0.51 MLSALPPSDPLFGNPFSAFAGSFTPWDCHDLFSSILEPTNDPKPVTSSSGSDEPNQTHEKPKPDPDEPNRDVSVMDERKRRRMISNRESARRSRMRKQRHLENLRNQLNKCRIENRELNNRLQFILHHCDRIRTENEWLRSERTFLRQKLSNFTQILVLQQLQQQPFSSSPAWTCNTMVMTE. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02235 182 MobiDBLite consensus disorder prediction 39 54 - -
Seca12g02235 182 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Seca12g02235 182 Gene3D - 76 130 - -
Seca12g02235 182 CDD bZIP_plant_GBF1 79 130 IPR045314 GO:0003700|GO:0006355
Seca12g02235 182 SMART brlzneu 74 138 IPR004827 GO:0003700|GO:0006355
Seca12g02235 182 Coils Coil 87 121 - -
Seca12g02235 182 SUPERFAMILY Leucine zipper domain 78 128 IPR046347 GO:0003700|GO:0006355
Seca12g02235 182 MobiDBLite consensus disorder prediction 35 98 - -
Seca12g02235 182 FunFam BZIP transcription factor 76 127 - -
Seca12g02235 182 MobiDBLite consensus disorder prediction 55 91 - -
Seca12g02235 182 PANTHER BZIP TRANSCRIPTION FACTOR 44 41 160 - -
Seca12g02235 182 Pfam bZIP transcription factor 78 136 IPR004827 GO:0003700|GO:0006355
Seca12g02235 182 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 139 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02235 Seca-Chr12 30119395 30119943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02235 1 166 bZIP Transcription Factor Family AT2G22850 38.073 5.05e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca12g02235 bZIP_1 4.9e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02235 - - ahf:112800711 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02235 12 30119395 30119943 Seca12g02235 12 30119395 30119943 PCT