Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02231 ATGAAGAGTATGGAAAATGATGACACTGTTGACATTAACAATCAAAATAACTGGTTGGGTTTCTCACTCTCACCCCAAATGAATATAGGTGTTCCTTCACACCCTCATCAGTCTCAAGAGCCTTCCTCTGCTGCTTCAGAAGTGGTTCCAGCAAGCTTTTACCACTCTGCTTCTCTTAATAACTATGGTTTTTATTATGGACTTGAAGCTGAAAATGTTGGGTTGTATTCAACCCTCCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTTTGAGTAGGTCACAAGCACAAGCAATGGCTACTACTTCAGCACCAAAACTGGAGAATTTCTTAGGTAGTGAGGCGATGGGGACCCCTCACTATGCATGTAGTGCCACAGAAACAATGCCTCTAAGCTTAGATAGTATGCTTTACAATCAACCCTCACGACCAAACAACCCAAATTACCAAAATCAAGTCCAAGTCCAACACATCAACAACCAACAACAACCACAAGAGCTTCATGCTCAACACTTTTCATATTACTCCACCTTGAGGAATCATGATGTGATGTTAGAAGGTTCCAAGCAAAGTCAAACTTCAGATAACAGTCTTCAGGTCCCAAACATGGCTGAGGATGGAGTTCCTGGTCTTAAGAGCTGGGTTGTGAGGAACTTCCCAGCAGCTAGCCATGCACAAGAGTCAAAGATGATTGTTCCTGTGGAGGAAAATGAAGGTGAATCAGGGTCCATTGGATCAATGGCATATGGGGATTTGCAATCTTTGAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGTTGTGTTACAAGTTCTCAGCGTACATCACCTGTTGTCATTGATTCTGTTGCCATGGAAACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAATCCATTGATACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAGGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTAACTAACTTTGACATAACAAAATATGATGTGGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCAGTGAACTAGCTAGGAGGAACAGAGAGGTAGAGGGTGGAACTCAGTATATTGATCACAAGCCTTCATCAACATATGAAGACACTCAACAAGCCATTTTAATGCAGAAGACCTGTGAAGGCCAATCAGATCAGTGGAAGATGGTTCTCTATCAATCCTCCCAACAACAACAACTTGACCAGAATCCACCAAGAATTGAACCTGATAGAACTCATCAATCCTTCTCAGTGTCTTTAGATAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAACAAGATGAGAACACATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTAAGCAGCTCAAGAGAAGGTAGCCCAGATAGGACAAGTTTGCCAATGCTCTCTGGAATGCCTTCAACAGCCACCAAACTATTGGCTACTAATCCAAATAGTAGCATGAATTCTTGGGATCCATCACCCCATTTGAGGCCTACCCTTTCTCTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATTCATAG 1989 0.4263 MKSMENDDTVDINNQNNWLGFSLSPQMNIGVPSHPHQSQEPSSAASEVVPASFYHSASLNNYGFYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALSRSQAQAMATTSAPKLENFLGSEAMGTPHYACSATETMPLSLDSMLYNQPSRPNNPNYQNQVQVQHINNQQQPQELHAQHFSYYSTLRNHDVMLEGSKQSQTSDNSLQVPNMAEDGVPGLKSWVVRNFPAASHAQESKMIVPVEENEGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRTSPVVIDSVAMETKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNREVEGGTQYIDHKPSSTYEDTQQAILMQKTCEGQSDQWKMVLYQSSQQQQLDQNPPRIEPDRTHQSFSVSLDNMFHQEVEESSNKMRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTATKLLATNPNSSMNSWDPSPHLRPTLSLPQMPVFAAWTDS. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02231 662 CDD AP2 417 478 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 PRINTS Ethylene responsive element binding protein signature 320 331 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 PRINTS Ethylene responsive element binding protein signature 458 478 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 ProSiteProfiles AP2/ERF domain profile. 418 476 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 SMART rav1_2 418 482 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 SMART rav1_2 319 388 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 Coils Coil 383 403 - -
Seca12g02231 662 ProSiteProfiles AP2/ERF domain profile. 319 382 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 CDD AP2 318 382 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 MobiDBLite consensus disorder prediction 586 617 - -
Seca12g02231 662 MobiDBLite consensus disorder prediction 580 617 - -
Seca12g02231 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 560 - -
Seca12g02231 662 FunFam AP2-like ethylene-responsive transcription factor 417 478 - -
Seca12g02231 662 FunFam AP2-like ethylene-responsive transcription factor ANT 318 384 - -
Seca12g02231 662 SUPERFAMILY DNA-binding domain 417 477 IPR016177 GO:0003677
Seca12g02231 662 Gene3D AP2/ERF domain 318 384 IPR036955 GO:0003700|GO:0006355
Seca12g02231 662 Gene3D AP2/ERF domain 418 478 IPR036955 GO:0003700|GO:0006355
Seca12g02231 662 Pfam AP2 domain 319 374 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 Pfam AP2 domain 419 468 IPR001471 GO:0003700|GO:0006355
Seca12g02231 662 SUPERFAMILY DNA-binding domain 318 384 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02231 Seca-Chr12 29942049 29946390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02231 399 662 AP2-EREBP Transcription Factor Family AT4G37750 26.087 4.91e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca12g02231 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02231 K09285 - gmx:100787611 989.949