Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02220 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAGACTTACATCCAACAGTACGGCACCGGTGGCAACTGGATTGCCCTTCCACACAAAATAGGCCTGAAAAGGTGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGTCCAAATCTTAAACATGGCAGTTTCTCACAAGAAGAAGACAACATCATTTGCACCCTCTATCTTAATATTGGAAGCAGATTTAACGCTTTGATTTATATACAATTAAACAGGTGGTCGATTATAGCAGCGCAATTACCAGGGCGTACAGATAATGATATAAAGAACTACTGGAACACTAAATTGAAGAAGAAGCTTCTAGCTCGCCGAGTTAGGCAAGAGATCAAGAGAGAAAGTAATTTGGTGTTACCTATCAGCCAAACTGATCCCTATTATTATTATCCTACACAGCAACACTACTCCTTGTCCACTCCAGTGGCAAATGCTGCTACTTCCATCATCCAAGACTATAATCAAACAGCATCACTAGAAGATCATCAACAGCCATACACCATGAATTCATCACAATACTCATGTGACATCATTTCCTTCCCACAAGACCCATCCACAATGAATAACATCATAACCTCCACAGCAAACATATTTCAAGGGTTTGGGAACTTCCCCATCCCCAATGAGTTGAATTACGAGGAGCAACAACAAATAGATGATGGTGGATCAGTGGAGGTTTTTCATGGAATGGAGGGTAATGGTAGCACGAGTACGGCTTCAACAGAAAGCAATAATAATTGGGGAGATATAAGCTCTTTGGTTTACTCACCTCTGCTTTCTGGCTATGAAGGTGGCCAGGCAATGCCTCATGCTGTTACTTTCGAGGAGTGTAGGTACTTTGGGATGCAAGCGCAATAA 936 0.4306 MGRAPCCDKATVKRGPWSPEEDAKLKTYIQQYGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNLKHGSFSQEEDNIICTLYLNIGSRFNALIYIQLNRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLARRVRQEIKRESNLVLPISQTDPYYYYPTQQHYSLSTPVANAATSIIQDYNQTASLEDHQQPYTMNSSQYSCDIISFPQDPSTMNNIITSTANIFQGFGNFPIPNELNYEEQQQIDDGGSVEVFHGMEGNGSTSTASTESNNNWGDISSLVYSPLLSGYEGGQAMPHAVTFEECRYFGMQAQ. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02220 311 Gene3D - 7 68 - -
Seca12g02220 311 PANTHER OS09G0431300 PROTEIN 1 271 - -
Seca12g02220 311 SUPERFAMILY Homeodomain-like 12 120 IPR009057 -
Seca12g02220 311 CDD SANT 70 124 IPR001005 -
Seca12g02220 311 Pfam Myb-like DNA-binding domain 69 122 IPR001005 -
Seca12g02220 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca12g02220 311 Gene3D - 69 144 - -
Seca12g02220 311 FunFam Transcription factor RAX3 7 68 - -
Seca12g02220 311 CDD SANT 16 62 IPR001005 -
Seca12g02220 311 ProSiteProfiles Myb-like domain profile. 63 124 IPR001005 -
Seca12g02220 311 SMART sant 13 64 IPR001005 -
Seca12g02220 311 SMART sant 67 126 IPR001005 -
Seca12g02220 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca12g02220 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 128 IPR017930 -
Seca12g02220 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02220 Seca-Chr12 29722770 29723862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02220 1 282 MYB Transcription Factor Family AT3G49690 44.048 4.24e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g02220 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02220 K09422 - gmx:100791406 320.472