Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02214 ATGGGTCTTGATCAGGATGGTAGTAACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACTCTTACACCGCAAGACACCCACAAGGTGGATGATGTTAGGCCAAGCCCAACGCCAAGGAAGGCTTATTATGAGGCTGAACCATCGTTAACGTTGGGTCTGTCCGGTGAGAGTTACCCTCATGCGCAGCAAGTGGTGAAAAATAATAAGATGGATATAATAGAGCACAGTAATAATAAAGTTTATTACTGTGAGGACCCTCTTGATCATTTGTCTACACAGACTTCACCTCACACTCACAGCGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTCAGTAGTGAAGAAATGGAGGCAGCAGAGATAGAGAGGGTTTCTTCACGAGCCAGCGATGAAGATGAAGAAGGAACCACTACCAGGAAGAAACTCAGACTTACCAAAGAACAATCTGCTATGCTTGAGGAAAGCTTCAAACAGCACAGCACTCTCAATCCTAAACAGAAGCAGGCTTTAGCGAAGCAGTTAAATCTACGGCCTCGACAAGTTGAGGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGTGAGTTTCTAAAGAAATGCTGTGAAACGTTGACAGATGAGAACAGGAGGCTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAATTATCACAGCCTTTGTATATGCCTATGCCTGCGGCAACTCTCACCATGTGTCCTTCTTGTGAGAGGCTTGGTGGTGTCAACGGTGGTGCTTCTAATAAAACCTCATTCTCCATCGCTCCCAAGCCTCACTTCTTCAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 873 0.4708 MGLDQDGSNSGLQLILGLALTLTPQDTHKVDDVRPSPTPRKAYYEAEPSLTLGLSGESYPHAQQVVKNNKMDIIEHSNNKVYYCEDPLDHLSTQTSPHTHSAVSSFSSGRVKRERDLSSEEMEAAEIERVSSRASDEDEEGTTTRKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPMPAATLTMCPSCERLGGVNGGASNKTSFSIAPKPHFFNPFTNPSAAC. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02214 290 FunFam Homeobox-leucine zipper protein 18 129 206 - -
Seca12g02214 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 269 - -
Seca12g02214 290 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Seca12g02214 290 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Seca12g02214 290 Coils Coil 207 237 - -
Seca12g02214 290 MobiDBLite consensus disorder prediction 109 149 - -
Seca12g02214 290 Gene3D - 149 199 - -
Seca12g02214 290 SMART HOX_1 143 205 IPR001356 GO:0003677
Seca12g02214 290 CDD homeodomain 145 202 IPR001356 GO:0003677
Seca12g02214 290 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Seca12g02214 290 MobiDBLite consensus disorder prediction 93 108 - -
Seca12g02214 290 MobiDBLite consensus disorder prediction 93 149 - -
Seca12g02214 290 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Seca12g02214 290 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Seca12g02214 290 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02214 Seca-Chr12 29569940 29572133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02214 1 290 Homeobox Transcription Factor Family AT4G37790 60.000 1.49e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g02214 Homeodomain 8.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02214 K09338 - gmx:100784129 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02214 12 29569940 29572133 Seca12g02214 12 29569940 29572133 PCT