Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02189 ATGACGCAAATTTCATCAACCAAGTACTTGCCTGAATTTGGAATGGAGGATCCAGCTTCCTTTCATCAATACCCTCCAATGGATTCCTTTGTATTCCAGCTTGATGATCTTGATTTTGACTCATTCTCCGAGTCCCTAGAGAGCTATTCCTCTCAGAAGCGCTTCAATTCAGAAAGCACACAAAACTCTTTCCCCGTTGAAAGTCCTGAATATCAATCTGTTGCCCCTGCTACAAGACCAACCAAACAGCTCAAGACTGAGAGTACCAACACCTGGACTAGTACTACTACTACTTATGGCACTCACTTGAAGGCGCCCAACAAGGCTTCTCCTAATCCATCCTCAAAAATAATTTCTTTTGAGAATTGCAATGTTGCTTCCCAACAATTCTACAAAATGGATCCCAATGTGAAGCCAAAAACCGAGACAGGGTATGGTGAAAACTTGGATTTTACAGCTGCTATTTCTCAAGGTGCTTTAAACTATGATAAACTAGAAAACAAAGCTACCACTACAACAGCTAGAAACTCTGTTCAAGCTCGAGACCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTTAGTCAGAGATTCATTGCTCTTTCTGCTATCCTTCCTGGACTCAAAAAGATGGATAAGGCTTCTGTGTTGGAAGATGCTATCAAGTATGTGAAACAACTACAGGAACAGGTGAAGAATCTGGAGGAAAAAGTAACAGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAGATCAATTCTGTTCTCAGATGATGATAGCTCTTCTTCAGATGAAAACTCTGACCAACAGTTACTCCCTGAAATCGAAGCAAGAGTTTCAGGGAAAGATGTACTCATCAGAATCCACTGTGACAAACACAGTGGACGAGCATCGCTTGCATTACTCAGTGAATTAGAAAAGAATAATCTCACAGTTCAGAGTAGCAGCGTTTTGCCTTTTGGGAATAACGCTCTTGACATAACCATTGTTGCTCAGATGAACAAGGAATACAACTTGAAAACAAAGGATCTCATAAGAAGGTTAAGTCAAGCTTTGAGGCAGCTCATTTGA 1071 0.4043 MTQISSTKYLPEFGMEDPASFHQYPPMDSFVFQLDDLDFDSFSESLESYSSQKRFNSESTQNSFPVESPEYQSVAPATRPTKQLKTESTNTWTSTTTTYGTHLKAPNKASPNPSSKIISFENCNVASQQFYKMDPNVKPKTETGYGENLDFTAAISQGALNYDKLENKATTTTARNSVQARDHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLEDAIKYVKQLQEQVKNLEEKVTDKTVESAVFVKRSILFSDDDSSSSDENSDQQLLPEIEARVSGKDVLIRIHCDKHSGRASLALLSELEKNNLTVQSSSVLPFGNNALDITIVAQMNKEYNLKTKDLIRRLSQALRQLI. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02189 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Seca12g02189 356 Coils Coil 217 244 - -
Seca12g02189 356 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Seca12g02189 356 SMART finulus 184 233 IPR011598 GO:0046983
Seca12g02189 356 CDD bHLH_AtNAI1_like 180 252 - -
Seca12g02189 356 MobiDBLite consensus disorder prediction 50 113 - -
Seca12g02189 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 244 IPR036638 GO:0046983
Seca12g02189 356 Gene3D - 177 247 IPR036638 GO:0046983
Seca12g02189 356 PANTHER BHLH TRANSCRIPTION FACTOR 29 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02189 Seca-Chr12 29055120 29057589 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02189 4 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 37.950 1.03e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g02189 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02189 - - gmx:100798011 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02189 12 29055120 29057589 Seca12g02189 12 29055120 29057589 ECH