Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02185 ATGGCTTCAGTGGAGGAATCATGGACTGATTGGTTGTGTGATATGGAACCAGATCATTACACTTTCATCAACCAATCAGAAACAAAGGTGGATGATGCAAGTTTACCATCCCAACATGATATAGCTACTGCTCCACAGGAAGAAAATCCTCAAAGATCTTTCTCTACAGAGAGCCACTGTTCATATGCAACTTTCAACACAGAAAACACCAGCACCACCATGAGCAATTCTTCAGTGGCAGAGAGCACCTTAGAGAGGCCTTCCAAGTTACTCAAAACCGAGTCACAAAAGACAGCTTCTTCTCCTTCCTCTTACATTCTTTCCTTTGACAAAGTCAATCCACCACCAATAAAGGTTGAACCAGCCTTAAAGCCCAAAACCAAGGTCATGAATCATGGAATAATGCCTTTGAATTCAAAGAATAATGAACCGAAACGAGTTATTCAGGAGGGTAAGAAGATCAACTCATTTTCCAGATCTACTCATCACACACCAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAGACCTTAAAAAGATGGACAAGGCCTCTGTGTTGGGTGATGCTATAAAGTACTTGAAACAGCTCAAGGAGCAAGTGAAACAATTGGAGGAGCAGAGCAAAAGGAAAAGCGTGGAATCGGTGGTGTTTGTGAAGAAATCTTCTCAGGTCTCTGCGGATGAAGATGTTTCAGATACCTCTTCAAATTCCTGTAATGGGAACTCTGATGATCCCTCAAAAATTAATCTTTCACTGCCAGAAGTTGAAGCGAGGGTGTCAGAGAAGAAAGTGCTAATTCGAATTCTCTGTGAGAAAGAAAAGGCACTGTTGGCGAATATATTTAAGGAGATAGAGAAACTTCATCTCTCAGTGATTAATAGCAGCTCCTTTTGTTTCGGTTCATCTGTTATGGTCATAACCACCATAGCCGAGATGGACGATGAGTTCAACATGAGCGTGAAGAAACTGGCTAGAAACCTCAGAGTTGGACTGATGCAATTTATGTAG 1053 0.4141 MASVEESWTDWLCDMEPDHYTFINQSETKVDDASLPSQHDIATAPQEENPQRSFSTESHCSYATFNTENTSTTMSNSSVAESTLERPSKLLKTESQKTASSPSSYILSFDKVNPPPIKVEPALKPKTKVMNHGIMPLNSKNNEPKRVIQEGKKINSFSRSTHHTPDHIIAERMRREKISQQFIALSALIPDLKKMDKASVLGDAIKYLKQLKEQVKQLEEQSKRKSVESVVFVKKSSQVSADEDVSDTSSNSCNGNSDDPSKINLSLPEVEARVSEKKVLIRILCEKEKALLANIFKEIEKLHLSVINSSSFCFGSSVMVITTIAEMDDEFNMSVKKLARNLRVGLMQFM. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02185 350 Coils Coil 201 228 - -
Seca12g02185 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Seca12g02185 350 Gene3D - 161 232 IPR036638 GO:0046983
Seca12g02185 350 PANTHER BHLH TRANSCRIPTION FACTOR 45 349 - -
Seca12g02185 350 MobiDBLite consensus disorder prediction 242 261 - -
Seca12g02185 350 MobiDBLite consensus disorder prediction 29 97 - -
Seca12g02185 350 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983
Seca12g02185 350 SMART finulus 168 217 IPR011598 GO:0046983
Seca12g02185 350 MobiDBLite consensus disorder prediction 39 84 - -
Seca12g02185 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 229 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02185 Seca-Chr12 28851272 28854082 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02185 152 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.500 1.54e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g02185 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02185 - - gmx:100803386 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02185 12 28851272 28854082 Seca12g02182 12 28701122 28703346 PCT