Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02182 GCACCGAATAAGAATAGTATAGCTCTGAATTACCAAAGAGCAACTCTTATCTTTCCTTCTTTCAAGAACCTACAGTACAGTTCCTTACTGTTAATTAATTGTATTTCAGTGATGGAGGAAATAAACACACCAATAGATGCATCTGCAGCTAACTGGTTATCTGATTTGGAAATGGATGATTACAACTTATTTCCTGATGAATGCCACTTGAACTTTCTTAATGTTGATGATGAAGAGTTTCTTTCACATGACATAGCTAGTGCCCTGCAGGGACAGACCCTGCAACAATCTTTATCTTCAGAGTGCACTTCCAAAACTCTGAGCAACTCATTTACTGATGAAACAAGTTTTGACTTTGAGAGACCTGCCAAGTTGCTGAAAACAATTAGCACTACTAGCGGTTCTAACTCATCTAGCATCACTGAAAACATTTCACCAAAACTTTCACCATCATCATCTATTTCATCCTTCCAGTCTCAGATTCTGTCTTTTGACAACCCCACAAACTCATCCCCTGCCAACACCACCCAGTTTTATGGGTTTGAATGTGCCTTTAACCCAAAACAGAATGAGATGGTGTCACTGTCACTGCCCCAGTTGGGAAATCCTCATCTCTCAACTCAAACCCCAAAAGGGTCCTCAAAAAATCAAAACTTTGAAACAAAAACCTCACATAGTAAGAGGTCTCCAGCTCATGCTCAAGATCACATCATGGCTGAGAGAAAGCGTAGAGAGAAGCTTAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCGGTATTAGCGGACGCTATCAAGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGTTGGAAGAGCAGAGCAAGAAAACAAAAGGAGCAGAGTCGGTAGTGGTTCTGAACAAATCAGAGGTCTGTGGTGATGATGATTCCTCTTCATGTGATGAGAGCATTGAAGGTAATGGTGCCACTAAATCAATGTTTCAAGTGGAAGCAAGAGTATCAGGGCAGGAGATGCTGATTCGGATCTACTGTCATAAACATAAGGGAATTGTTGCCAAAATTCTCACCGAGATTCAAAGTTTTCACCTATTTGTCATCAATAGCAGTGTATTACCCTTTGGGGATTCTATCCTCGACATTACCATTATTGCTCAGATGGGAGAAGATTACGACTTGACGATCAAGGAACTTGTCAAGAACCTACGCACGGCAACATTGAAATTTATGTCATAA 1245 0.4112 APNKNSIALNYQRATLIFPSFKNLQYSSLLLINCISVMEEINTPIDASAANWLSDLEMDDYNLFPDECHLNFLNVDDEEFLSHDIASALQGQTLQQSLSSECTSKTLSNSFTDETSFDFERPAKLLKTISTTSGSNSSSITENISPKLSPSSSISSFQSQILSFDNPTNSSPANTTQFYGFECAFNPKQNEMVSLSLPQLGNPHLSTQTPKGSSKNQNFETKTSHSKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLADAIKYVKELKERLAVLEEQSKKTKGAESVVVLNKSEVCGDDDSSSCDESIEGNGATKSMFQVEARVSGQEMLIRIYCHKHKGIVAKILTEIQSFHLFVINSSVLPFGDSILDITIIAQMGEDYDLTIKELVKNLRTATLKFMS. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02182 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 293 IPR036638 GO:0046983
Seca12g02182 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Seca12g02182 414 MobiDBLite consensus disorder prediction 130 151 - -
Seca12g02182 414 CDD bHLH_AtNAI1_like 232 305 - -
Seca12g02182 414 MobiDBLite consensus disorder prediction 198 242 - -
Seca12g02182 414 MobiDBLite consensus disorder prediction 198 220 - -
Seca12g02182 414 MobiDBLite consensus disorder prediction 221 242 - -
Seca12g02182 414 Pfam Helix-loop-helix DNA-binding domain 235 280 IPR011598 GO:0046983
Seca12g02182 414 SMART finulus 237 286 IPR011598 GO:0046983
Seca12g02182 414 Coils Coil 270 297 - -
Seca12g02182 414 Gene3D - 218 296 IPR036638 GO:0046983
Seca12g02182 414 PANTHER BHLH TRANSCRIPTION FACTOR 86 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02182 Seca-Chr12 28701122 28703346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02182 121 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.468 1.46e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g02182 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02182 - - gmx:100788128 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02182 12 28701122 28703346 Seca12g02182 12 28701122 28703346 ECH
Seca12g02185 12 28851272 28854082 Seca12g02182 12 28701122 28703346 PCT