Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02180 ATGTGCTTTTTGATGGATCCTCAAACTGGGAACAAGGTCTGCTATGTCCAGTTTCCTCATAGAGTTGATGGTATTGATACTCATGATCATTATGCCAACAGGAACACAGTTTTCTTTTATATTAACATAAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGGACAGGATGTGTTTTTAGGAGGCGAGATTTGTATGGTTATAATCCTCCTAGGAGGCAAGATATGTTTCACACACACACACACATATGA 255 0.3961 MCFLMDPQTGNKVCYVQFPHRVDGIDTHDHYANRNTVFFYINIKGLDGIQGPVYVGTGCVFRRRDLYGYNPPRRQDMFHTHTHI. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02180 84 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 82 IPR029044 -
Seca12g02180 84 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 75 - -
Seca12g02180 84 Pfam Cellulose synthase 1 77 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02180 Seca-Chr12 28470273 28470634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02180 1 73 Cell Wall Biosynthesis AT5G17420 82.192 9.26e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02180 K10999 - gmx:100799375 144.05