Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02179 ATGGCTGGTTTGGATTTAGGAAGTGCTTCTTCACGCTTTGTTCAAAACCTTCACAGACCAGACTTGCACCTTCAGCAGCACTTTCACGATTCCGAAGAAAACCAGCAAGAACCGAACCGCGGTGGTGCAGGACCGTTTTCGAGCGAAGACGATGACCGAAGCCAAGGCTTGGAGCTAGCCTCGGCGGCAGGTCCAGGCGACGTGGTTGGACGCCGTCCACGTGGCAGGCCGCCGGGATCAAAGAACAAGCCGAAGCCGCCGGTGATTATAACGAGAGAGAGCGCAAACACTCTGAGGGCTCATATTCTCGAAGTCGGAAGTGGCTCCGACGTTTTCGAATGCGTAACTACCTACGCGCGGCGTCGACAGCGTGGGATCTGTGTTCTCAGCGGTAGCGGTACCGTTACCAATGTCAGTCTCCGGCAGCCGGCGGCGGCTGGAGCCGTCGTCACGCTCCATGGAAGGTTCGAGATACTGTCTCTCTCAGGTTCGTTTCTTCCGCCGCCGGCTCCGCCGGGGGCGACTAGTCTGACGATATATCTCGCCGGAGGACAGGGACAGGTGGTCGGAGGGAGCGTGGTTGGGGAACTTACGGCGGCGGGACCGGTGATCGTGATAGCGGCTTCGTTCACGAACGTGGCTTATGAGAGGCTGCCGTTGGAGGAGGAGGAACAGCAGCTTCAGATGCAGGCGGCGGCGGGAGGTTCTCAAGGTTCCGGTGGTGGTGGTGTGGGGAATAATCCTTTTCCAGATCCTTCTTCTGGACTTCCGTTTTTCAATTTGCCGCTGAATCATATGCAGAATGTTCAGTTGCCAGTGGATGGTTGGGCGGGAAACTCAGCTCCACGTCCACCTTTTTGA 861 0.5749 MAGLDLGSASSRFVQNLHRPDLHLQQHFHDSEENQQEPNRGGAGPFSSEDDDRSQGLELASAAGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQQLQMQAAAGGSQGSGGGGVGNNPFPDPSSGLPFFNLPLNHMQNVQLPVDGWAGNSAPRPPF. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02179 286 Gene3D - 98 233 - -
Seca12g02179 286 CDD DUF296 99 182 IPR005175 -
Seca12g02179 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Seca12g02179 286 PIRSF ESCAROLA 7 286 IPR014476 GO:0003680
Seca12g02179 286 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Seca12g02179 286 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Seca12g02179 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 240 IPR014476 GO:0003680
Seca12g02179 286 MobiDBLite consensus disorder prediction 225 251 - -
Seca12g02179 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Seca12g02179 286 MobiDBLite consensus disorder prediction 229 243 - -
Seca12g02179 286 MobiDBLite consensus disorder prediction 17 89 - -
Seca12g02179 286 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02179 Seca-Chr12 28448197 28449057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02179 1 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.404 9.33e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02179 - - pvu:PHAVU_003G230600g 385.956