Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02175 ATGGATTCCCGGGCAGCGCCGCCTACCATGATGCCGGGACCCACCTCGTACCTTCCGAACAACTCCTCTCCAATGATCAGCCCTAATTCCGCCACCATCATGGCCCCCGCCACCGCCCGATTCCCCTTCGGCTCCTCCGCCGCCGCTCCACCTCCGCAGCCGCCTCCTCTGTCGGAGCCCTTCACCGCCACCTACGACGGACACCCAACGTCGCCCACCGGCGGCCTCGCCAAGAAGAAGAGGGGCCGACCCAGGAAGTACTCGCCTGACGGTAACATTGCCCTCGGCCTCGCCCCAACGCATGTGTCTCCTTCTCCCGTTGCCGGCGCTGCCGGTGATTCGGGCGCCACCTCCGCCGAAGCTCAGGCGAAGAAGCATAGGGGAAGGCCTCCGGGCTCTGGGAAGAAGCAGTTGGATGCTCTTGGAGCCGGTGGGGTTGGGTTCACTCCACATGTAATCTTGGTGGACTCTGGCGAGGACATTACTGCAAAACTTATGGCCTTTTCTCAGCAAGGGCCACGGACAGTTTGTATTCTTTCTGCCAATGGTGCAATCTGCAATGTCACCCTCCGACAGCCAGGATCAGCTGGTGGTACCGCAACGTTCGAGGGGAGATTCGAGATTATATCTTTATCAGGTGCTTTGCAGCTATCTGAAAATAATGGTGAACGTAGCAGAACAGGCAGTTTGAGTGTTTCCATTGCAGGGTCTGATGGACGAGTTATGGGTGGCGGAGTTGCCGGAATGCTAACTGCAGCATCACCTGTACAGATCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCAAGCTCGAATGTCCTGAAATCTGGGCCTTCTTCAGCACCACCAACCTCCCAAATGTTAACCTTTGGTGCACCTATGACTCCAACTAGTCCTACATCTCAAGGGCCTTCAACTGAGTCCTCGGAGGACAATGATCACAGTCCTTTTAGTAGGGGACCTGGACTCTACAACAATGCTAGTCAGCCTGTTCATAATATGCAGATGTACCATCATCCACTATGGGCTGGCCAAAGTCATCAGTGA 1050 0.5571 MDSRAAPPTMMPGPTSYLPNNSSPMISPNSATIMAPATARFPFGSSAAAPPPQPPPLSEPFTATYDGHPTSPTGGLAKKKRGRPRKYSPDGNIALGLAPTHVSPSPVAGAAGDSGATSAEAQAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVDSGEDITAKLMAFSQQGPRTVCILSANGAICNVTLRQPGSAGGTATFEGRFEIISLSGALQLSENNGERSRTGSLSVSIAGSDGRVMGGGVAGMLTAASPVQIIVGSFIADGKKSSSNVLKSGPSSAPPTSQMLTFGAPMTPTSPTSQGPSTESSEDNDHSPFSRGPGLYNNASQPVHNMQMYHHPLWAGQSHQ. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02175 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 321 IPR039605 GO:0003680
Seca12g02175 349 MobiDBLite consensus disorder prediction 270 312 - -
Seca12g02175 349 MobiDBLite consensus disorder prediction 15 34 - -
Seca12g02175 349 CDD DUF296 149 263 IPR005175 -
Seca12g02175 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 264 - -
Seca12g02175 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Seca12g02175 349 ProSiteProfiles PPC domain profile profile. 144 284 IPR005175 -
Seca12g02175 349 Gene3D - 150 275 - -
Seca12g02175 349 MobiDBLite consensus disorder prediction 1 141 - -
Seca12g02175 349 MobiDBLite consensus disorder prediction 270 330 - -
Seca12g02175 349 SMART AT_hook_2 78 90 IPR017956 GO:0003677
Seca12g02175 349 SMART AT_hook_2 124 136 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02175 Seca-Chr12 28245214 28250364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02175 77 327 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.896 1.39e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02175 - - gmx:100789717 469.159