Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02172 ATGCCAGTTCCACTTGCTCCCTACCCGACACCACCTGCTCCTGCTCCATACACACCACCAACAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGCCATACTCTACTCATGTACATCCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGGTATTGAACTATCAAATCAGGTGGCACATGTCAACTGTGGGAATTGCAGGATGCTCCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACCTCAGTTGGGGTCAGTATAATCTCCTCTTCCTTACTATGTATGTAG 453 0.4746 MPVPLAPYPTPPAPAPYTPPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIELSNQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIISSSLLCM. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02172 150 NCBIfam zinc finger domain, LSD1 subclass 108 138 IPR005735 -
Seca12g02172 150 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Seca12g02172 150 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Seca12g02172 150 SUPERFAMILY Multiheme cytochromes 30 132 IPR036280 -
Seca12g02172 150 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Seca12g02172 150 Pfam LSD1 zinc finger 30 54 IPR005735 -
Seca12g02172 150 Pfam LSD1 zinc finger 69 93 IPR005735 -
Seca12g02172 150 Pfam LSD1 zinc finger 111 135 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02172 Seca-Chr12 28073354 28075799 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca12g02172 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02172 - - qsu:112000975 241.121