Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02169 ATGGCTTTTGCTAACACAAGCACTGACTCAACTAATGCAAAGTATCAGCATGTAAACGTTTTAGTGACATCTGGATCGTTGATACCCTCTCTTGTAAAATGCATGCTCTTTCATCTGGACAGCTTAATAACACATGGAAATGTTTATAGCTCTTGGGAAGTGGGAAAAACTCAATGTTTCCAGTGGATCAAGGAGCGTTTCAACCATCCCAATGTTCGCTTTTGTGTAATTGGAGATGGATGGGAAGAGTGTAAAGCTGCAGAAATCATGAGATGGCCATTTGTTAAGATTGAATCAGGTCCGGGAAAACCTCACAGGTTCCCTGGTCTCACAGTGAGAACAATTAGCCACTATTTTTCTGTGGTGTATGGAAGACCGGCCAATGAGAACGATGAGGAATGA 402 0.4204 MAFANTSTDSTNAKYQHVNVLVTSGSLIPSLVKCMLFHLDSLITHGNVYSSWEVGKTQCFQWIKERFNHPNVRFCVIGDGWEECKAAEIMRWPFVKIESGPGKPHRFPGLTVRTISHYFSVVYGRPANENDEE. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02169 133 PANTHER EYES ABSENT 9 119 IPR028472 GO:0004725
Seca12g02169 133 Gene3D - 1 103 IPR038102 -
Seca12g02169 133 SUPERFAMILY HAD-like 18 109 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02169 Seca-Chr12 28018966 28021585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02169 7 133 Protein tyrosine phosphatase (PTP) family AT2G35320 60.000 2.62e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02169 - - gmx:100791661 247.284