Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02166 ATGGGTTGCACCATGAGAGAAAAGCATATCAGAGCTAATCGGAGGCCTCGATCATCGGCAAAACCCGATTCCGATTCTTGTGACAAGGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAACCCTTCAAATACAACCTGGGTCTCACCGATTCTTCTTCTCAGAACCCTAATCCCAACCCAAACCCCAACCCTAATAATGAGGAAACTGGATGGGGATATTGCACGGAGGAACAATTAGAAGAGATCTTATTGAAAAACTTGGAATTCGTATACAATGAAGCTGTCTCAAAGCTTGTTGCTTTGGGCTATGATGAGGATGTTGCTGTCAAAGCCATGTTGCGAAATGGTCATTGTTATGGTGGAATGGATGTGCTGACAAACATCTTGCATAACTCCCTAGCGTTCTTGAATAGCAATTGTGGTGGTGGTGGTGGTGGAAATAATGGGGATTTGGATGAGGCTGAACCTGTGTTCTCTGACTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGTAAAGGTGATGCAATGTGGTGTCTGCTCATGAGTGATCTTCATGTGGGAAGGGCTAGTACTATGGAAATTCCTGTGCCTGGAGGTGGGTGCCCTGCTCCTGCTACTGTTGAGGCTGGTGGTGGCAATTCGGTTGGTGTTATGGCTCCAGCTCTGTGCAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCAGTGAATGGAATCTTCTCTTGTGGTGCAGAGATGAATTTACAGTTGCAAAGAGATATTGAATTCCCAAAGAGGTTTAATCTTTCTCCATCAATGAAGTCCTTATTGAAAAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAACAATCACAGACACAGGCAAAGGCCTCTCCTGGCCGTAGCACTGGGTCTACGTTGGATTCTTCGGCTGTAGCTGGGGCGGAAGTTCCAGCTGATCAGTCTGGAGATTCTCAGAATGCTGATAACCAAGATGCTGTGAACTCAGTGCTGAGTAAATTTCGTGATTTAAATCTTGATGAGAATTTGGAGCTTGTGGCAGAAGATCAGAAGGATGAGGTGATAGTAACTTTATTTCATCAGATTAAGGATCTCGAAAAACAGGTCAAGGATCGAAAAGATTGGGCTCATCTGAAGGCAATGCAAGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTACGGATGGAAAGAGAAGAGACTCAAAAATTAAAGAAAGGGAAACAGGCACTTGAGGATACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGAAGACTAGAGACAGAGAATGCAGAAATCAAGGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTCACAGCTTGCTTGGAAGTGGCGAAAAGGGAGAAAAAATACCTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTACAGCAGGAGATTTCTGATGAAAAAGAGAAGATATTGGAGACACAAGAAGTATTGGCTCAGATTAGACAGTGTCAAAAAGAAGCTGAGGTTAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTTGCTCTAGTTGAGGAGGAACGCCGAGCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAAGCTTGAGGCTCTGCGGCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTGCTAAGACTTGAGCAGGAGCTTTCACGCCTTAAAGCATCTGTTCAGTCTGCTGAGTTGCATCACCAATCAAATACTTCACCTATAAGTGATTATGAGGGTGGCAAGCCCCAAAGAGAGACCATTGCTAAGCTGCTTCAAGAATTAGATAATCTGGAGGATTTTTCAGAGAAAGAAGTGAATGGCAACAGAGAGTGCATTATATGTATGAAAGATGACGTCTCTGTTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAAAAAGGGTAAGGCTGCTTGTCCTTGCTGCCGGGTTCAAATCCAGCAGAGAATCCGTGTATTTGGAGCAAGTTCTTAG 2163 0.4475 MGCTMREKHIRANRRPRSSAKPDSDSCDKDAISKSIAESGLKPFKYNLGLTDSSSQNPNPNPNPNPNNEETGWGYCTEEQLEEILLKNLEFVYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDVLTNILHNSLAFLNSNCGGGGGGNNGDLDEAEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGGGCPAPATVEAGGGNSVGVMAPALCRFHGGWGFGNGGGLDFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQSQTQAKASPGRSTGSTLDSSAVAGAEVPADQSGDSQNADNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKDRKDWAHLKAMQAARKLSSDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKYLKKLLAWEKQKAKLQQEISDEKEKILETQEVLAQIRQCQKEAEVKWKEELKAKEEAFALVEEERRAKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASVQSAELHHQSNTSPISDYEGGKPQRETIAKLLQELDNLEDFSEKEVNGNRECIICMKDDVSVVFLPCAHQVMCASCSDEYGKKGKAACPCCRVQIQQRIRVFGASS. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02166 720 SUPERFAMILY RING/U-box 646 712 - -
Seca12g02166 720 Coils Coil 502 536 - -
Seca12g02166 720 MobiDBLite consensus disorder prediction 305 347 - -
Seca12g02166 720 ProSiteProfiles Zinc finger RING-type profile. 666 706 IPR001841 -
Seca12g02166 720 SMART ring_2 666 705 IPR001841 -
Seca12g02166 720 MobiDBLite consensus disorder prediction 305 327 - -
Seca12g02166 720 MobiDBLite consensus disorder prediction 45 73 - -
Seca12g02166 720 MobiDBLite consensus disorder prediction 16 31 - -
Seca12g02166 720 PANTHER OS05G0141500 PROTEIN 1 715 IPR046934 -
Seca12g02166 720 Pfam Family of unknown function (DUF6592) 88 205 IPR046527 -
Seca12g02166 720 MobiDBLite consensus disorder prediction 1 31 - -
Seca12g02166 720 Coils Coil 594 621 - -
Seca12g02166 720 Coils Coil 555 585 - -
Seca12g02166 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 717 IPR013083 -
Seca12g02166 720 Pfam Zinc finger, C3HC4 type (RING finger) 663 711 - -
Seca12g02166 720 Coils Coil 446 487 - -
Seca12g02166 720 CDD RING-HC_MIP1-like 664 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02166 Seca-Chr12 27928961 27935323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02166 646 716 C3H Transcription Factor Family AT1G73950 37.333 3.49e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02166 - - gmx:100777787 1167.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02166 12 27928961 27935323 Seca12g02166 12 27928961 27935323 PCT