Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02164 ATGGGAGGGGCATCACTGCCACCAGGCTTTCGTTTCCACCCAACTGATGAAGAACTAGTGGGATACTACCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTTGATCCATGGGAGTTGCCCGAGAAATCCTTCCTGCCAAAACGAGATTTAGAATGGTTTTTCTTTTGTCCACGGGATCGTAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGATATTGGAAAGCCACTGGAAAAGATAGAAAGGTTGTGTGTCAGTGTACTCCATCCACTGTCACAGCATACCGCAAGACACTGGTTTTCTATCTTGGAAGGGCCCCTTTAGGGGATAGAACTGATTGGATCATGCATGAGTATCGCCTCTGTGATGATGATCTTGGCCAAGGTTCACCATGTTTTCAGGGGGGTTTTGCTTTGTGCCGGGTTATCAAAAAGAATGAGAAGGGGCGTGATTGGATGGGAGAACACAAAGGCAAGAGGGCTGAAAGAGGTTTGATCAATGAGAATGACACCTCAATGAGAATCTCTAGTGATCCCTTGAGCATCTCTGGTGGTGATGTTTCCTCTCAAGCAAGTCACCTGAATAATGAGAGTCATTATTCAAGTCCTATTGCTTCTCCAGACAATGTGGCTCCAATGCCAGAGTTTAACCAAGTTTCCACAGAAACCAATCCTTCAGAATTCTGGATCTCCCCTGAGATGATTCTTGATTCTTCAAAGGACTATACTCAAGTACAAGATGCTGTGTCTGAATATTCTCCTAAGAATGACTTACCAAATACAATGACATCATGGCAATCATTGGATCATACAGAGATTTCATCTGGTTTATGTTACTCAAATTTTAATGGGGAAATTGAATTTGCTGATAATCTCAGTCAAATTGGTTGCATGTCACCTTACTCAAGCCAAGGGAATTTCATGGATTTCTATGGAAATTGGAATGTTCCTTATGAAGGTTATGATCAAATCAATTCAATCTCATACCCAGAGCCTTTCTAA 1047 0.4145 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQCTPSTVTAYRKTLVFYLGRAPLGDRTDWIMHEYRLCDDDLGQGSPCFQGGFALCRVIKKNEKGRDWMGEHKGKRAERGLINENDTSMRISSDPLSISGGDVSSQASHLNNESHYSSPIASPDNVAPMPEFNQVSTETNPSEFWISPEMILDSSKDYTQVQDAVSEYSPKNDLPNTMTSWQSLDHTEISSGLCYSNFNGEIEFADNLSQIGCMSPYSSQGNFMDFYGNWNVPYEGYDQINSISYPEPF. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02164 348 MobiDBLite consensus disorder prediction 184 220 - -
Seca12g02164 348 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Seca12g02164 348 MobiDBLite consensus disorder prediction 168 182 - -
Seca12g02164 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 238 - -
Seca12g02164 348 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Seca12g02164 348 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Seca12g02164 348 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Seca12g02164 348 MobiDBLite consensus disorder prediction 168 238 - -
Seca12g02164 348 FunFam Nac domain-containing protein 86 15 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02164 Seca-Chr12 27908242 27911079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02164 1 302 NAC Transcription Factor Family AT4G17980 54.426 2.97e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g02164 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02164 - - gmx:100792714 575.089