Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02162 ATGGGAAGTGGACTTTCCAGCTTGTGTTCATGCTTCGAACCGGTGAACCGGACCAACCGACCGGACCAACAGGAACTCATTTTCACAGCCACCGAACCATTGGACGAAACCCTAGGTCACTCCTTCTGCTACGTCAGATCCTCCAATCGCTTCCTCTCTCCCACTCACTCCGATCGATTCCTCTCTCCCTCAACTTCCCTTCGCTTCTCACCAAACCACGACCGAATCCGACCCGAATTTCACGAAACCGGGTTCAAAGCCATTTCCGGAGCCTCCGTCAGCGCTAACAGCTCCGTCCCTAAAACGGTTATACAGTTAGACGAAGATAGCGCCATCGATTGCGCTGGAGGAGCTGCCACTAAGGGTAATATCGTCAATGGGTTTGAAAGTACGTCGTCGTTTAGCGCTCTCCCGCTTCAGCCCGTGCCGCGTGGTGGGGAACTCTTTGAAGGGGGTGGGTTCTTTCTCTCTGGCCCAATTGAGAGTGGTGCACACTCTGGACCAATTAACGCGGGTGTCGGCGGTGACGGTGGCGTTGCCGGCGGCGGCGGAGAGGTTCCTTTCTCGGCGCCGCTTGGGGGGATGTACGCGAGGAAGAAGAAGGGTGTTTCGGGGTTTAGGAAGGCTTTCAACCGGAAGGTGTCGGAGAAGAAGCGGCCGTGGGTTGTGCCGGTGTTGAACTTCGTTGGGAGGAAGGAGGTTCAAGTTCCGACGAGTGAGGGGAGGCCGCCGGTGGTGCCGGAGGCGAAGAACGAGAACAATGTGCAGTGGGCGCTGGGGAAGGCAGGGGAGGATCGGGTTCATGTGGTGGTGTCGGAGGAGCAAGGGTGGTTGTTCGTCGGGATTTATGACGGTTTCAACGGCCCCGACGCGCCGGAGTTTCTGATGGGTCATCTTTACCGCGCTGTTCACAACGAGCTTCAGGGTTTGTTTTGGGAAGTTGAAGAAGAAGGAGAAGAAGCTCACGAGAGTAGTAACCCTGCAGGCACAGACCAGAGCGTTGGGCTGAAAAACAAAGAGGGAGAAGATGGTTCGGCGAAGATGGTACAGGGAACTGGAACTGGAACTGGAACGGAGAGTAAACGGCGTAGGCTATGGGAACTTCTCGCTGAAGACCCTGAAGATGGGCTTGATCTTTCTGGGTCTGACAGGTTTGCGTTTTCTGTTGATGATGCACTTAGCGTTAGCAATGCCAATGCTGGCTCCGCAGTTAGTAGACGGTGGCTGTTGCTGTCGAAATTGAAGCATGGATTATCAAAGCATAAAGAGGGTCATGGTCATGGTCATGGTCAAGGTCATGGTCATGGTAATGGTAATGGTAATGGTAGGAAGTTGTTGCCTTGGAATTTGGGGACGGAGGAGAAAGAGAAGGTAGAGGTGGAGAACAGGGCTGAAGATAAGCCTAGTGGTGGTGGTGGTGCGGGTGGGAGGAGGAGGAAAGTGGGTCCTGTGGATCATGATCTGGTTTTGAGTGCACTGTCTCGGGCTCTAGAAGTGACTGAGCTTGCATATTTGGCTATGACGGATAAGCTTCTGGATACAAATCCTGAACTTGCTTTGATGGGTTCGTGTCTGTTAGTTGCTTTGATGAGGGATGAGGATGTGTATGTGATGAATGTTGGGGATAGCCGTGCTATTGTTGCACACTATGAGACCAAGGAGGTTAGTTCTAATGTGGAACCGGGAAGCAAGGGAGATACTGGTTCCAGCACCGAGAGCATAGTTGAGACTGAGAGTGCAATCGAGTTGGGGAATCAGGGTCCTGGTCAAGACATGAGGTTGGTTGCTTTGCAGCTGTCTACTGACCACAGCACCAGCATTGAAGAAGGGGCGCTCATTGTTTTGCAGGAAATCATTAGAATTAAGAATGAGCATCCTGATGATACCCAATGTATAGTCAATGATAGAGTCAAGGGTCGTCTTAAGGTCACCAGAGCGTTTGGGGCCGGATTTTTGAAACAGCCAAAGTGGAACGATGCAGTACTAGAAATGTTTCGTAATGAATATATTGGCACTGCTCCATATATATCCTGTTGTCCTTCACTACGTCACCATAGATTATGCCCGAGAGATCAGTTCCTGATCCTCTCATCTGATGGTTTATATCAATATTTAAACAATGAAGAAGTGGTTTCTCAAGTTGCGAGCTTCATGGAAAAGTTTCCAGAAGGAGATCCTGCCCAACATTTAATAGAAGAACTGCTCCTCCGTGCAGCCAAGAAGGCTGGAATGGATTTTCATGAGTTGCTGGATATCCCACAAGGAGATCGGAGGAAGTATCATGATGATGTTACTGTTATGGTGATATCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTGTGA 2352 0.506 MGSGLSSLCSCFEPVNRTNRPDQQELIFTATEPLDETLGHSFCYVRSSNRFLSPTHSDRFLSPSTSLRFSPNHDRIRPEFHETGFKAISGASVSANSSVPKTVIQLDEDSAIDCAGGAATKGNIVNGFESTSSFSALPLQPVPRGGELFEGGGFFLSGPIESGAHSGPINAGVGGDGGVAGGGGEVPFSAPLGGMYARKKKGVSGFRKAFNRKVSEKKRPWVVPVLNFVGRKEVQVPTSEGRPPVVPEAKNENNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGHLYRAVHNELQGLFWEVEEEGEEAHESSNPAGTDQSVGLKNKEGEDGSAKMVQGTGTGTGTESKRRRLWELLAEDPEDGLDLSGSDRFAFSVDDALSVSNANAGSAVSRRWLLLSKLKHGLSKHKEGHGHGHGQGHGHGNGNGNGRKLLPWNLGTEEKEKVEVENRAEDKPSGGGGAGGRRRKVGPVDHDLVLSALSRALEVTELAYLAMTDKLLDTNPELALMGSCLLVALMRDEDVYVMNVGDSRAIVAHYETKEVSSNVEPGSKGDTGSSTESIVETESAIELGNQGPGQDMRLVALQLSTDHSTSIEEGALIVLQEIIRIKNEHPDDTQCIVNDRVKGRLKVTRAFGAGFLKQPKWNDAVLEMFRNEYIGTAPYISCCPSLRHHRLCPRDQFLILSSDGLYQYLNNEEVVSQVASFMEKFPEGDPAQHLIEELLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02162 783 ProSiteProfiles PPM-type phosphatase domain profile. 247 771 IPR001932 -
Seca12g02162 783 MobiDBLite consensus disorder prediction 419 481 - -
Seca12g02162 783 SMART PP2C_4 248 769 IPR001932 -
Seca12g02162 783 Gene3D - 435 778 IPR036457 -
Seca12g02162 783 Gene3D - 232 408 IPR036457 -
Seca12g02162 783 PANTHER PROTEIN PHOSPHATASE 2C 249 770 IPR015655 GO:0004722|GO:0006470
Seca12g02162 783 MobiDBLite consensus disorder prediction 449 466 - -
Seca12g02162 783 Pfam Protein phosphatase 2C 598 739 IPR001932 -
Seca12g02162 783 CDD PP2Cc 485 771 IPR001932 -
Seca12g02162 783 MobiDBLite consensus disorder prediction 315 360 - -
Seca12g02162 783 SUPERFAMILY PP2C-like 261 772 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02162 Seca-Chr12 27809669 27815547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02162 1 783 PP2C-type Phosphatase Gene Family AT2G35350 55.689 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02162 - - mtr:11415473 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02162 12 27809669 27815547 Seca12g02162 12 27809669 27815547 PCT