Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02159 ATGGGTTGTTTACACTCCAAAACCGCTCATCTTCACTCTCCTGAAGACCCTCCTACTGCATTACCCGACTCTAAGAAACCCGATCCAGGTGATGGTGGGGATGATGTCGATCAAGAGTGTCAGGTTCCAGCATTCAAAGAGTATGGTCTGAATGAACTGCGAAGGGCCACAAATGAGTTCAGCACAGATTACATTGTTTCTGAAAGTGGTGAGAAAGCTCCCAATGTGGTCTACAGAGGAAAGCTGGAGAACAATCGGTTAGTTGCTGTCAAACGGTTCTCCAAATTGTCATGGCCTGATGCTCAACAGTTTATGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAAAGACTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAGCATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTTAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCATGGAAAACCGGAAAATATATCATGATCTGAATGCATATAGAATTCTTTTTGATGAGGATGGTGATCCCCGTTTATCAAGTTTCGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTACACTCCACCTGAATTTTTGCGAACAGGCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTGAGTGGCAAGCATATTCCTCCAAGCCATGCTTTGGACCTAATTAGAGGGAAAAATGCATTGTTGTTGATGGATTCGTCCCTAGAAGGGCAATATGCAAATGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGATATTAAGTTTCTTCTTACTGCAGTTGCACCTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTGTTAATGGGCCTTACTAAAACCACGGCAGTGCTACCAACCATGCTTTCTCCTCTGGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGGTATGTCAAATCACCATGTTTTTTCCTAAAATGCTGGTTTAA 1167 0.4276 MGCLHSKTAHLHSPEDPPTALPDSKKPDPGDGGDDVDQECQVPAFKEYGLNELRRATNEFSTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNALLLMDSSLEGQYANDDATKLVELASKCLQFEARERPDIKFLLTAVAPLQKQKEVASHVLMGLTKTTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENEVCQITMFFPKMLV. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02159 388 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 35 376 IPR045845 GO:0004672|GO:0009742
Seca12g02159 388 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02159 388 SUPERFAMILY Protein kinase-like (PK-like) 50 314 IPR011009 -
Seca12g02159 388 MobiDBLite consensus disorder prediction 19 33 - -
Seca12g02159 388 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g02159 388 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Seca12g02159 388 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Seca12g02159 388 Pfam Protein tyrosine and serine/threonine kinase 76 311 IPR001245 GO:0004672|GO:0006468
Seca12g02159 388 FunFam probable serine/threonine-protein kinase At4g35230 35 138 - -
Seca12g02159 388 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02159 Seca-Chr12 27730506 27736497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02159 14 317 Glycoside Hydrolase AT3G07070 33.735 2.46e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca12g02159 PK_Tyr_Ser-Thr 7.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02159 K14500 - gmx:100793576 732.25