Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02151 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCAAAGGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGCACTTCTGCTGCCGAGATAAAAGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAGGCCTTGTCAGCAATCTCAAGTAGACCTGAATGCTTCCACATTGCCATAGTGGAGGTGAGCTCAAGCAATTCCCAGGGAGGTTTCAAATTTCTTGAAAATGCTAAGGATTTGCCAACCATTAGTAAGTCCAGAAACCAAACCCAAATTTGTTGGTTTAACTTCTTGACTTCAAACAATCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCCGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTTGTTCACAAGGCTTTCAATGCTGGGGCAAGTTCCCAGTCTGAATCACTAAAACCTGTCAAAGAATCTGTGGTGTCCATGTTGCAGCTCCAAACAGACAACATGCAACATGAAAATGAAGTCTCAAATGATGAAGAGAAAGTATCTGGGTTTATTGACAATGACCATGAGCAGTATCCAGCTCCTTCAACCCCACAATTGAAACAAGGGGCAAGATTACTCCATGATGGGGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGCGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAACAGAGGAAATCTGAATCTGAATCTGAAATGACTCTGGTTAAGGTGGAAGAGGATTTTGGAGATGCTTCTAAGGGTGATAGTGCAGTTTCTCAGCATCCACAAAATAAAAAGGTTCTCAGCAACGCTGACAGTAACACAGCATGTCCAAATAAAGTGCGTGTCCATAGTGATAAATGTGAGATAAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACATCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGGCAAATCTTGCCCAAGGAAGATGATCGAAAATGGCTAAATCAAAGAGATCCAATGCACAGGAGCTATTGTCATCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCACACCCTTCCTCCACCTCCTGTATATCCTGTGTGGGGACAATCTGGTGGCCAAATGGCTGGCATGCAGATTTGGAGCCCTCCTGGTTATCCCTTGTGGCAGCCTACAGAAAGTTGGCACTGGAAACCATATCCCGGGAATGTTGCAGATGCATGGGGCTGCCCTGTGTTACCACCTCCTCAAGCTCCTTGCTTTTCCTACGCTCAGAATGTACCTGCGATACATGATGCTAATGCAATGGATTACACATTTAGCATGCCACATAGTTCCTTTGAGCAGTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTACCCTTGGGCCTCAAACCACCTTCCACAGATAGTGTGTTGGCTGAGCTTTCCAGGCAAGGAATTTCCAGCATCCCTCCTAGAAGCTGTTCTAATCTGAGTTGA 1710 0.4392 MVCTANDLQEWKDFPKGLKVLLLEGDSTSAAEIKAKLEAMDYNVSTFCDENEALSAISSRPECFHIAIVEVSSSNSQGGFKFLENAKDLPTISKSRNQTQICWFNFLTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASSQSESLKPVKESVVSMLQLQTDNMQHENEVSNDEEKVSGFIDNDHEQYPAPSTPQLKQGARLLHDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQQRKSESESEMTLVKVEEDFGDASKGDSAVSQHPQNKKVLSNADSNTACPNKVRVHSDKCEIKANRKKMKVDWTSELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEDDRKWLNQRDPMHRSYCHQRPIMAFPPYHSNHTLPPPPVYPVWGQSGGQMAGMQIWSPPGYPLWQPTESWHWKPYPGNVADAWGCPVLPPPQAPCFSYAQNVPAIHDANAMDYTFSMPHSSFEQYPAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPRSCSNLS. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02151 569 MobiDBLite consensus disorder prediction 261 284 - -
Seca12g02151 569 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
Seca12g02151 569 FunFam Two-component response regulator-like APRR2 17 157 - -
Seca12g02151 569 SUPERFAMILY CheY-like 16 148 IPR011006 -
Seca12g02151 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 325 384 IPR017930 -
Seca12g02151 569 Pfam Myb-like DNA-binding domain 331 380 IPR001005 -
Seca12g02151 569 SUPERFAMILY Homeodomain-like 327 385 IPR009057 -
Seca12g02151 569 Coils Coil 171 191 - -
Seca12g02151 569 MobiDBLite consensus disorder prediction 226 305 - -
Seca12g02151 569 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 565 IPR044825 GO:0003700|GO:0045893
Seca12g02151 569 Gene3D - 324 386 - -
Seca12g02151 569 MobiDBLite consensus disorder prediction 245 260 - -
Seca12g02151 569 Gene3D - 18 162 - -
Seca12g02151 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 328 383 IPR006447 GO:0003677
Seca12g02151 569 MobiDBLite consensus disorder prediction 288 305 - -
Seca12g02151 569 FunFam Two-component response regulator 324 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02151 Seca-Chr12 27468652 27475213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02151 1 565 Response Regulator Gene Family AT4G18020 49.584 2.79e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca12g02151 Myb_DNA-binding 7.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02151 - - gmx:100777535 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02151 12 27468652 27475213 Seca12g02151 12 27468652 27475213 PCT