Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02145 ATGGCTTTCTCTGGTCTTTTGTGTCTTCTCCTTGCCACCTTTCTTCTCATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTTGTTCAATCCCGTGCATCATATTACCCAAATTCTAAAGAAAATGGCACAGATGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAATGGGGTTGGCTGTGGCGCCTGTTACCAGGTTAGGTGTACCAACAGTGCTTATTGTTCAGACAATGGTGTCACTGTAGTTTTAACTGACCAAGGCTCAGGTGATAACACTGACTTTATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAGAACTCTGATGCGGCTGCTTCTCTATTAGCTCTTGGTGTTGTTGGTGTTGAATACAGACGCGTTTCATGCAGCTATCCAAACAAAAACATTACAATTAAGATAGATGAGAGTAGCAGCAACCCTCATTTCTTGGCTTTTGTCATATGGTTTCAACAAGGAAGGAGTGACATAGCTGCTGTGCAGCTCTGCGAGGTACTTTCTGCTTCCTTGTCCTGTGATAAGTTGTCATTTTGTCAAATCTATGAGGTGAATAAACTCAAATTTTGA 636 0.4277 MAFSGLLCLLLATFLLMQTLADTSCTDCFVQSRASYYPNSKENGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAYCSDNGVTVVLTDQGSGDNTDFILSQRAFGGMAQNSDAAASLLALGVVGVEYRRVSCSYPNKNITIKIDESSSNPHFLAFVIWFQQGRSDIAAVQLCEVLSASLSCDKLSFCQIYEVNKLKF. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02145 211 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Seca12g02145 211 PANTHER EXPANSIN-B3 15 188 - -
Seca12g02145 211 Gene3D - 17 146 IPR036908 -
Seca12g02145 211 CDD DPBB_EXLB_N 30 146 - -
Seca12g02145 211 Gene3D - 147 210 IPR036749 -
Seca12g02145 211 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Seca12g02145 211 Pfam Lytic transglycolase 67 141 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02145 Seca-Chr12 27344567 27346055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02145 1 187 Expansin Gene Family AT4G17030 45.789 1.43e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02145 - - gmx:100794009 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02145 12 27344567 27346055 Seca12g02145 12 27344567 27346055 PCT