Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02125 ATGAAGTGTTTCTTCTTCAAAGACAAGTCCAAATCCGCCCCAGAATTGCAGAACCAAAATAGAAAGAAGAACCCAGCTGCGAATCGAGCAGCCAATTCAACAGGCTCGATATCATCACCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACAACTTTAGAGTTTTCACTCTGCAAGAGTTAAGAGAAGCCACAAATGGTTTCAGTAGGACACTGAAAATTGGAGAAGGGGGTTTTGGGAGTGTGTATAGAGGATCCATTAGGCCTCAAGATGGAAAAGGTGATCCAATTACTGTTGCTATCAAAAGGCTTAACACTCGTGGCTTCCAACTTTACAAATATACCTGCATTCTTATGCTGTTTTCTTTTCTTGTGAAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTCAAGCTTCTGGGTTATTGCTGTGTGGATGGAGAAAGAGGAATCCAAAGGCTTTTGGTGTATGAGTTCATGCCCAACAGGAGCTTAGAAGACCACCTTTTTCATAAATTATTATTTCCCCCCCTGCCGTGGAAATTAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTAGCTTATCTACATGAGGGACTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTTCTATTGGATGAAAATTTCCACGCAAAGCTCTCAGATTTCGGTCTTGCTAGGGAAGGGCCACAAGGTGATGATACTCATGTATCTACTGCGGTGGTTGGTACACAAGGATATGCAGCACCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGATATGTGGAGTTTTGGTGTTGTACTCTATGAGATCCTCACAGGAAGACGATCATTGGAAAGAAACCGTCCAACAGCAGAACAAAAGCTACTAGATTGGGTTAAACAGTATCCAGCTGATAGTGGTAGATTCAGCATGATAATGGATCCACGTCTCATGAACCAATATTCACTTGGTGCAGCTCGCAAAATAGCCAAGTTGGCTGAAAGCTGCTTAAAGAAGAACCCTGAAGATAGACCTTCCATGAGTCAGATAGTGGAAGGATTGAAGCAAGCATTGGAATTTTCAGAAACTTCAAACACTCCTCAGAACACTGGTGAATCCTCTCGGTCTAAATTGGTTAGGAAAGGTAAATAG 1191 0.4215 MKCFFFKDKSKSAPELQNQNRKKNPAANRAANSTGSISSPKSVKDLYREKEHNFRVFTLQELREATNGFSRTLKIGEGGFGSVYRGSIRPQDGKGDPITVAIKRLNTRGFQLYKYTCILMLFSFLVKGHKEWLAEVQFLSIVNHPNLVKLLGYCCVDGERGIQRLLVYEFMPNRSLEDHLFHKLLFPPLPWKLRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDENFHAKLSDFGLAREGPQGDDTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSGRFSMIMDPRLMNQYSLGAARKIAKLAESCLKKNPEDRPSMSQIVEGLKQALEFSETSNTPQNTGESSRSKLVRKGK. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02125 396 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Seca12g02125 396 ProSiteProfiles Protein kinase domain profile. 69 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02125 396 SUPERFAMILY Protein kinase-like (PK-like) 52 365 IPR011009 -
Seca12g02125 396 CDD STKc_IRAK 75 369 - -
Seca12g02125 396 MobiDBLite consensus disorder prediction 371 396 - -
Seca12g02125 396 Gene3D Phosphorylase Kinase; domain 1 47 170 - -
Seca12g02125 396 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 171 381 - -
Seca12g02125 396 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
Seca12g02125 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Seca12g02125 396 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g02125 396 PANTHER OS01G0588500 PROTEIN-RELATED 29 369 - -
Seca12g02125 396 MobiDBLite consensus disorder prediction 371 388 - -
Seca12g02125 396 MobiDBLite consensus disorder prediction 17 41 - -
Seca12g02125 396 Pfam Protein kinase domain 72 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02125 Seca-Chr12 26820101 26823618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02125 3 367 Glycoside Hydrolase AT3G07070 41.223 1.98e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g02125 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02125 - - gmx:100305403 620.542