Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02121 ATGACTAAGAGAACAAAGAAGGCTGGCATTGTTGGAAAATACGGTACCCGTTATGGGGCTAGTTTGCGGAAGCAAATTAAGAAGATGGAAGTTAGTCAACACAGCAAGTTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGGAAAGCAGTAGGAATATGGGGATGCAAGGACTGTGGTAAAGTGAAAGCAGGCGGTGCCTACACTTTGAATACCGCAAGTGCCGTGACTGTAAGGAGCACCATCAGGAGGTTGAGGGAACAAACTGAGAGTTAA 279 0.4444 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02121 92 FunFam 60S ribosomal protein L37a 2 92 - -
Seca12g02121 92 Pfam Ribosomal L37ae protein family 4 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca12g02121 92 NCBIfam ribosomal protein eL43 1 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca12g02121 92 Gene3D - 1 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Seca12g02121 92 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca12g02121 92 PANTHER ZGC:171772 1 92 - -
Seca12g02121 92 SUPERFAMILY Zn-binding ribosomal proteins 10 82 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02121 Seca-Chr12 26650578 26652690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02121 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.478 7.82e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02121 K02921 - pop:18105104 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02121 12 26650578 26652690 Seca12g02121 12 26650578 26652690 ECH