Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02115 ATGGAGGAGAGGTATGAGCCATTAAAGGACCTTGGTTCTGGTAATTTTGGAGTCGCTAGGTTGGCCAAAAACAAGAAGACTGGAGACCTTGTTGCAGTCAAATACATCGAGAGAGGGAAAAAGTCTGTGTTTCTTCTGAGTTATTTGTGGTATCAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTCTTGCTGACCCCTACTCATTTAGCTATAGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAGAGGATATGCACTGCTGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGACTTGAAATTGGAAAACACTCTCTTGGATGGGAATCCATCCCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGGTTAATAGCATTTCACTTAATATTCAATTGCAGTCTGCTTTATTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCAAGGAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTAGTTGGTGCATACCCATTTGAAGATCCAGAAGACCCTAGAAATTTCAGAAAGACTATTGGGAGGATAATAGGTGTTCAGTACTCCATACCCGACTATGTTCGTGTTTCTGCTGAGTGTAGGAATCTTCTCTCTCGTATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATCCCAGAGATAAAACAGAACCCTTGGTTTTTGAAGAATCTGCCTAAAGAGATCATTGAAGCTGAAAAAAAAGGTTATGTGGAAACAAAGAAGGACCAACCAAGCCAGAGTGTGGAAGAAATCATGAGGATAATACAAGAGGCAAGGGTACCAGGAAAAGAATCCAAAGCTGGTGGCAGTGGGCAAGCTAGCACTGGGTCATTGGACATTGAGGATGATGAGGAAATTGATGTCAGCGGTGACTATGAACATGTGTGA 1077 0.4197 MEERYEPLKDLGSGNFGVARLAKNKKTGDLVAVKYIERGKKSVFLLSYLWYQIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKVNSISLNIQLQSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNLLSRIFVADPAKRITIPEIKQNPWFLKNLPKEIIEAEKKGYVETKKDQPSQSVEEIMRIIQEARVPGKESKAGGSGQASTGSLDIEDDEEIDVSGDYEHV. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02115 358 SMART serkin_6 5 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02115 358 MobiDBLite consensus disorder prediction 322 358 - -
Seca12g02115 358 FunFam Serine/threonine-protein kinase SRK2E 92 291 - -
Seca12g02115 358 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Seca12g02115 358 ProSiteProfiles Protein kinase domain profile. 5 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02115 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Seca12g02115 358 CDD STKc_SnRK2 4 282 - -
Seca12g02115 358 PANTHER SERINE/THREONINE KINASE 3 309 - -
Seca12g02115 358 Gene3D Transferase(Phosphotransferase) domain 1 92 290 - -
Seca12g02115 358 SUPERFAMILY Protein kinase-like (PK-like) 3 291 IPR011009 -
Seca12g02115 358 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca12g02115 358 Pfam Protein kinase domain 5 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02115 Seca-Chr12 26444203 26449115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02115 4 295 CBL-interacting serine-threonine protein kinases AT4G24400 41.297 8.01e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca12g02115 Pkinase 4.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02115 K14498 - gmx:100817713 622.083