Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02104 ATGATGGAAGGAATGGGCAAGAAGTTAATGACGAGATCCATATTGAAATTCCAAGATTTGTTGCTAAATGATTCAGCTGATCCTCTTGCTTCTATTGTTCAAAGTACATATCCTATGTTATTGGAAAACATGAAAGAGCCAAGTTTCTTTCAAGATCAACCTATTTCAGCACCTACAAATGATATTTTTGATACTTTGAATGATTACATGTTATCACTCATTCCTGCCGGCCAAAATTGCAGATGGAGTAGAAGAGGACGCGGGGCACTAGAGCAGAAGAGGAAAACGCAAAGTCAGACAGATTTCCAGCCAAAGGTGTTGAAGTGTCAAATAATTATTGGAGGGACAGAGATGGAGACAGGAAAGCGAGACAGAAGATTTGAATCCGCTTTGAGGTTGGAAGTGGGATGCTTTAAAAATAAGCTCCCTAAAGCTCCTAGAATTATGGAGGAGAGAACAGAAAGTTTCGTTGGTGATGTTGGCTTGGAAGACATGGGAGTTAAAAGTGCAGAAGAAATGTTTAATGAGAATGTAGATGAAGGAGTGGCCATTAAAGGGTCAGATGACTTTGTGAAAATTGACCCACTGGTTCTTTCAGAGGAGGGGTTTTCAGCTAGAAAAAGCAAAAAACGAAAAAACAAGAATGGGGAGATGATAGAGAAGATGTTTCTCTGCCATAGAGAAGGAAATAGAGAGAAAAAGGAGGATGAAAATGAAGAATCAAATATACAAGTGCGTGAATCAAGGCCTGAGACTAGAACTGGTTGTCTTGCTAGAATGGGGGTTCGTGTTGATGCACAAACTGGGCGTTGGCATGTGAGAGAGATCAGGGACATGCACAACCATCCGTTGTTGGCAAAGAAATTCTTTGGGATGTTGCCAACCCATATGAAGATGTCTGAAGCTGACATAATGCAAATGAACTTGCGAAGAGATCTATACAATCGAATTCGAACTCAAAGATTGAAGCAGTGCTCAGATGCAAAGGATGCAATACAATACCTTCGGCAACTACGATCTGATGATCGATCTTTTTTTTTTGAGGCACACTGTTGA 1056 0.4044 MMEGMGKKLMTRSILKFQDLLLNDSADPLASIVQSTYPMLLENMKEPSFFQDQPISAPTNDIFDTLNDYMLSLIPAGQNCRWSRRGRGALEQKRKTQSQTDFQPKVLKCQIIIGGTEMETGKRDRRFESALRLEVGCFKNKLPKAPRIMEERTESFVGDVGLEDMGVKSAEEMFNENVDEGVAIKGSDDFVKIDPLVLSEEGFSARKSKKRKNKNGEMIEKMFLCHREGNREKKEDENEESNIQVRESRPETRTGCLARMGVRVDAQTGRWHVREIRDMHNHPLLAKKFFGMLPTHMKMSEADIMQMNLRRDLYNRIRTQRLKQCSDAKDAIQYLRQLRSDDRSFFFEAHC. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02104 351 Pfam PIF1-like helicase 17 79 IPR010285 GO:0000723|GO:0003678|GO:0006281
Seca12g02104 351 Pfam FAR1 DNA-binding domain 201 285 IPR004330 -
Seca12g02104 351 MobiDBLite consensus disorder prediction 227 251 - -
Seca12g02104 351 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 201 305 - -
Seca12g02104 351 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02104 Seca-Chr12 26300308 26306151 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02104 FAR1 5.7e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02104 - K17604 adu:110280242 112.079