Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02097 ATGGGTTTCAAGCACCAACTTGGCCTTGTTTGTGTCATACTACTCCTTCCTGTTCTATGTAATTGCCAGCAATTTACTAAATCCAGAGCATCCTATTATGGCACCGCTGATGGTTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGTGACTATGGAAGGACAGTCAATGATGGCAGTGTCACAGCTGTATCCGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGGATGTTACCAGGTTAGGTGCAAAATACCAGAATTATGTGATGTCAATGGAGCAAATGTGGTAGTAACAGACTATGGTGAGGGAGACAGAACCGACTTTATCATGAGTCCGCGTGGCTTCTCAAAATTGGGACGCAACCAAGATGCATCTGATAAGTTGAAGAAATATGGTGTAGTGGATGTTGAATACAGAAGGGTCTCTTGTACATTCAAGGGTTATAGCATCACGTTTGAAATCAATGAACATAGTAAAAACCCTGGCTACTTTGCTATCGTGGTTCTCTATGTAGGTGGAACATACGACGTCACTGCTGTTGAGATGTGGCAGAAGGAACACTACAAATGGGAGGCCTTGCGTAGGACCAACGGGGCAGTGTTTGATTTTGCTAACCCACCAAAAGGTGAAATCCGCTTGAGGTTCCAAGTGAGCAACAGTGCAGGGGTTAAATGGGTTGAGCCCAACTTTACAATCCCTGCAAATTGGAAGGCTGGAGCATCTTATTCCTTCAATATTTAA 741 0.4453 MGFKHQLGLVCVILLLPVLCNCQQFTKSRASYYGTADGYGNPRGACGFGDYGRTVNDGSVTAVSAKLWKNGAGCGGCYQVRCKIPELCDVNGANVVVTDYGEGDRTDFIMSPRGFSKLGRNQDASDKLKKYGVVDVEYRRVSCTFKGYSITFEINEHSKNPGYFAIVVLYVGGTYDVTAVEMWQKEHYKWEALRRTNGAVFDFANPPKGEIRLRFQVSNSAGVKWVEPNFTIPANWKAGASYSFNI. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02097 246 Gene3D - 22 141 IPR036908 -
Seca12g02097 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
Seca12g02097 246 PANTHER EXPANSIN-B3 14 243 - -
Seca12g02097 246 CDD DPBB_EXLB_N 26 143 - -
Seca12g02097 246 SUPERFAMILY Barwin-like endoglucanases 11 147 IPR036908 -
Seca12g02097 246 Gene3D - 142 244 IPR036749 -
Seca12g02097 246 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Seca12g02097 246 SUPERFAMILY PHL pollen allergen 150 243 IPR036749 -
Seca12g02097 246 Pfam Lytic transglycolase 61 138 IPR009009 -
Seca12g02097 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 148 IPR007112 -
Seca12g02097 246 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Seca12g02097 246 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Seca12g02097 246 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Seca12g02097 246 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Seca12g02097 246 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Seca12g02097 246 SMART dpbb_1 60 138 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02097 Seca-Chr12 26212784 26215102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02097 1 246 Expansin Gene Family AT4G17030 51.210 8.89e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02097 - - psat:127074244 399.823