Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02095 ATGGAACTCAAACTTGGCCTCGTTTGTGTCATACTTCTCTTTCCTGTTCTATGTAACGCCCAGGGATTTTTTACTAAATCCAGAGCATCCTATTATGGCACCCCTGATGGCTTTGGCAATAAAAGGGGAGCTTGCGGCTTTGGCGACTATGGAAGGATGGTCAATGGTGGCAGTGTCTCAGCCGTGTCTGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGCTTGCTATCAGGTAAGGTGTAAAATACCACAATTATGTGATGTAAATGGAGCATATGTGGTGGTGACAGATTATGGTGAGGGATACAGAACTGATTTCATCATGAGCCCACGTGGCTTCTCAAAATTGGGACGCAACCCAGCTGCATCTGACAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACATAGTAGTAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTAGGTGGGACATACGATGTCACTGCTGTTGAGTTGTGGCAGATGCAGAACCGCAAATGGGAGCCCCTACGTAGGTCCTATGGGGGAGTGTTTGACTTTGCTAACCCACCAAGAGGTGAAATCCGCTTGAGGTTCCAAGTGAGTACCAATGCAGGGCTTAAATGGGTGGTTCCCAAGGTTCCAATCCCTTCAAATTGGAAGGCTGGAGCTACTTATACCGCAAGTATTTAA 738 0.4566 MELKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGFGNKRGACGFGDYGRMVNGGSVSAVSAKLWKNGAGCGACYQVRCKIPQLCDVNGAYVVVTDYGEGYRTDFIMSPRGFSKLGRNPAASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVELWQMQNRKWEPLRRSYGGVFDFANPPRGEIRLRFQVSTNAGLKWVVPKVPIPSNWKAGATYTASI. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02095 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 243 IPR007117 -
Seca12g02095 245 Gene3D - 143 243 IPR036749 -
Seca12g02095 245 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Seca12g02095 245 PANTHER EXPANSIN-B3 14 243 - -
Seca12g02095 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Seca12g02095 245 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Seca12g02095 245 Pfam Lytic transglycolase 60 137 IPR009009 -
Seca12g02095 245 SUPERFAMILY Barwin-like endoglucanases 10 146 IPR036908 -
Seca12g02095 245 Pfam Expansin C-terminal domain 149 228 IPR007117 -
Seca12g02095 245 CDD DPBB_EXLB_N 25 142 - -
Seca12g02095 245 Gene3D - 16 142 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02095 Seca-Chr12 26199262 26200783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02095 3 245 Expansin Gene Family AT4G17030 51.852 1.82e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02095 - - psat:127074244 396.356