Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02094 ATGGAACTTAAACTTGGCCTCGTTTGTGTCATACTGCTCTTTCCTGTTCTGTGTAACGCCCAGGGATTTTTTACTAAATCTAGGGCATCCTATTATGGTACCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGGTTTGGTGACTATGGAAGGACTGTCAATGGTGGCAGTGTCACAGCCGTGTCTGCTAAGTTATGGAAGAATGGAGCTGGTTGTGGTTCATGCTATCAAGTTAGGTGCAAAATACCACAATTATGTGATGTCAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGCGCCTTCTCAAAACTGGGACGTGACCAAGTTGCATCCGACAAGCTAAAGAAATATGGTGTATTAGATATTGAATACAAAAGAGTCCCATGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACACAGCAGTAATCCTGGCTACTTTGCTATTGCGGTTCTCTATGTAGGTGGGACATACGATGTCACTGCTGTTGAGATGTGGCAGTTATTTGCATTATTTCTCTCCTCTCTGCGTCTAAGAATTCGTCATTTAGACATGGAACTCAAACTTGGTCTCGTTTGTGTCATATTGCTCTTTCCTGTTCTGTGTAACGCCCAGGGAATTTTTACTAAATCTAGGGCATCCTATTATGGCACCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGCGGCTTTGGCGACTATGGAAGGATGGTCAATGGTGGCAGTGTCTCAGCCGTGTCTGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGCTTGCTATCAGGTAAGGTGTAAAATACCACAATTATGTGATGTAAATGGAGCATATGTGGTGGTGACAGATTATGGTGAGGGATACAGAACTGATTTCATCATGAGCCCACGTGGCTTCTCAAAATTGGGACGCAACCCAGCTGCATCTGACAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACATAGTAGTAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTAGGTGGGACATACGATGTCACTGCTGTTGAGTTGTGGCAGATGCAGAACCGCAAATGGGAGCCCCTACGTAGGTCCTATGGGGGAGTGTTTGACTTTGCTAACCCACCAAGAGGTGAAATCCGCTTGAGGTTCCAAGTGAGTACCAATGCAGGGCTTAAGTGGGTCGTGCCTACAGTTCCAATCCCCGCGAATTGGAAGGCTGGAGCTACTTATACCACAAGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTATGTAATTGCCAGCAATATACAAATTCCAGAGCATCCTATTATAGCACCCCTGATGGCTATGGGTATCCAAGGGGAGCTTGTGGCTTTCGTGACTATGGAAGGACGGTTAATGACGGTAGTGTCGCAACTGTGTCTGCTAAGCTATGGAAGAATGGAGTTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATACCAGAATTATGTGATGTCAATGGAACATATGTGGTGGTAACAGACAACTATGGTCAGGGAGATGGAACAGACATCATTATGAGCCCACGAGGCTTCTCAAAATTGGGATCTAACCCAGCTGCAACTGACAAGTTGAAGAAATACAATGGAGTAGATATTGAATACAAAAGGGTCCCCTGTTCATTCAAGGGCAATAACATTGTGTTTCAGATCAATGAACAAAGTAAAAAGCCTGGTTACTTCTCTATCACGGTTCTCTATGTAGGTGGAACATATGATGTTACTGCTGTTGAGATGTGGCAGCAAGAACACAACAAATGGGAGCCTTTGCAAAGGACCAATGGGGCAGTGTTTGGATTTGGTAACCCACCAAACGGTGATATCCACTTGAGGTTCCAAGAGAGAAGGAGTACAGGGCTTAAATGGGTGAAGCTCTTGTTTCCAGTCCCTGCTAATTGGAAGGTTGGAGATACTTTTTCCTTTAATATGTAA 2052 0.4469 MELKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGYGNPRGACGFGDYGRTVNGGSVTAVSAKLWKNGAGCGSCYQVRCKIPQLCDVNGAYVVVTDYGEGDRTDFILSPRAFSKLGRDQVASDKLKKYGVLDIEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVEMWQLFALFLSSLRLRIRHLDMELKLGLVCVILLFPVLCNAQGIFTKSRASYYGTPDGYGNPRGACGFGDYGRMVNGGSVSAVSAKLWKNGAGCGACYQVRCKIPQLCDVNGAYVVVTDYGEGYRTDFIMSPRGFSKLGRNPAASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVELWQMQNRKWEPLRRSYGGVFDFANPPRGEIRLRFQVSTNAGLKWVVPTVPIPANWKAGATYTTSLVCVILLFPALCNCQQYTNSRASYYSTPDGYGYPRGACGFRDYGRTVNDGSVATVSAKLWKNGVGCGACYQVRCKIPELCDVNGTYVVVTDNYGQGDGTDIIMSPRGFSKLGSNPAATDKLKKYNGVDIEYKRVPCSFKGNNIVFQINEQSKKPGYFSITVLYVGGTYDVTAVEMWQQEHNKWEPLQRTNGAVFGFGNPPNGDIHLRFQERRSTGLKWVKLLFPVPANWKVGDTFSFNM. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02094 683 SUPERFAMILY Barwin-like endoglucanases 211 346 IPR036908 -
Seca12g02094 683 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 242 347 IPR007112 -
Seca12g02094 683 PANTHER EXPANSIN-B3 213 444 - -
Seca12g02094 683 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 361 443 IPR007117 -
Seca12g02094 683 SUPERFAMILY Barwin-like endoglucanases 447 585 IPR036908 -
Seca12g02094 683 Pfam Lytic transglycolase 260 337 IPR009009 -
Seca12g02094 683 Pfam Lytic transglycolase 60 135 IPR009009 -
Seca12g02094 683 Pfam Lytic transglycolase 497 557 IPR009009 -
Seca12g02094 683 SUPERFAMILY Barwin-like endoglucanases 10 146 IPR036908 -
Seca12g02094 683 CDD DPBB_EXLB_N 225 342 - -
Seca12g02094 683 Gene3D - 16 142 IPR036908 -
Seca12g02094 683 Gene3D - 216 342 IPR036908 -
Seca12g02094 683 Gene3D - 454 580 IPR036908 -
Seca12g02094 683 Gene3D - 581 681 IPR036749 -
Seca12g02094 683 Gene3D - 343 444 IPR036749 -
Seca12g02094 683 Gene3D - 143 190 IPR036749 -
Seca12g02094 683 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 599 681 IPR007117 -
Seca12g02094 683 Pfam Expansin C-terminal domain 149 183 IPR007117 -
Seca12g02094 683 Pfam Expansin C-terminal domain 587 661 IPR007117 -
Seca12g02094 683 Pfam Expansin C-terminal domain 349 429 IPR007117 -
Seca12g02094 683 PRINTS Expansin/Lol pI family signature 263 281 IPR007118 GO:0005576
Seca12g02094 683 PRINTS Expansin/Lol pI family signature 241 259 IPR007118 GO:0005576
Seca12g02094 683 PRINTS Expansin/Lol pI family signature 429 443 IPR007118 GO:0005576
Seca12g02094 683 PRINTS Expansin/Lol pI family signature 330 346 IPR007118 GO:0005576
Seca12g02094 683 PRINTS Expansin/Lol pI family signature 223 238 IPR007118 GO:0005576
Seca12g02094 683 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 479 585 IPR007112 -
Seca12g02094 683 CDD DPBB_EXLB_N 25 142 - -
Seca12g02094 683 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Seca12g02094 683 SMART dpbb_1 496 575 IPR007112 -
Seca12g02094 683 SMART dpbb_1 59 137 IPR007112 -
Seca12g02094 683 SMART dpbb_1 259 337 IPR007112 -
Seca12g02094 683 SUPERFAMILY PHL pollen allergen 586 680 IPR036749 -
Seca12g02094 683 SUPERFAMILY PHL pollen allergen 350 442 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02094 Seca-Chr12 26167623 26188659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02094 445 683 Expansin Gene Family AT4G17030 46.025 6.73e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02094 - - psat:127074244 398.667