Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02092 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTTATTTGTGTCATACTGCTCTATCCTGCACTTTGTAACTGCAAGGAATATTATACTAAATCTAGAGCAAGCTATTATGGCAGCCCTGATGGCTATGGGAATCCAAGGGGTGCTTGTGGCTTTGGTGACTATGGAAAGACGGTTAATGGTGGCAGTGTCGCAGCTGTGTCAGCTAGGTTATGGAAGAATGGAGTTGGTTGTGGTGCATGCTATCAAGTTAGGTGTAAAATACCAAAATTATGCAATGTCAATGGAGCATATGTGGTGGTAACAGACTACGGTGAGGGAGATAAAACAGATTTCATCTTGAGTCCACAAGCTTTCTCAAGATTGGGACATGCAAATTTGAGCAAATATGGGGTGGTGGATATTGAATACAAAAGGGTCCCCTGTACATTCAGGGGCTATGACATCGTGTTTCAAGTACATGAAAGTAGCAAAATCCCTGACTACTTTGCTATAGTGGTTCTCTATGTAGGTGGAACATATGAAGTCACTGGCGTTGAGATGTGGCAGAGAGATCACCACCAGTGGGAGCCTCTACGTAGGACTTATGGGGCAGTGTTTGACTTTGCTAACCCATCGAGAGATGAAATCCGCTTAAGGTTCCAAGTGAGTCGCAATGTGGAGCTTAAATGGGTGGAGTCAAGGTTTGCAATACCAAGAGATTGGAAGGTTGGAGCTACTTATGCCACCAGGATTCAACCTTATTAG 744 0.4382 MELSFKHQLGLICVILLYPALCNCKEYYTKSRASYYGSPDGYGNPRGACGFGDYGKTVNGGSVAAVSARLWKNGVGCGACYQVRCKIPKLCNVNGAYVVVTDYGEGDKTDFILSPQAFSRLGHANLSKYGVVDIEYKRVPCTFRGYDIVFQVHESSKIPDYFAIVVLYVGGTYEVTGVEMWQRDHHQWEPLRRTYGAVFDFANPSRDEIRLRFQVSRNVELKWVESRFAIPRDWKVGATYATRIQPY. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02092 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 146 IPR007112 -
Seca12g02092 247 SUPERFAMILY PHL pollen allergen 148 241 IPR036749 -
Seca12g02092 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 242 IPR007117 -
Seca12g02092 247 Gene3D - 25 139 IPR036908 -
Seca12g02092 247 Pfam Lytic transglycolase 64 136 IPR009009 -
Seca12g02092 247 Pfam Expansin C-terminal domain 148 231 IPR007117 -
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Seca12g02092 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Seca12g02092 247 SMART dpbb_1 63 136 IPR007112 -
Seca12g02092 247 SUPERFAMILY Barwin-like endoglucanases 16 145 IPR036908 -
Seca12g02092 247 CDD DPBB_EXLB_N 29 141 - -
Seca12g02092 247 PANTHER EXPANSIN-B3 17 245 - -
Seca12g02092 247 Gene3D - 143 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02092 Seca-Chr12 26125485 26127607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02092 1 244 Expansin Gene Family AT4G17030 50.403 4.97e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02092 - - psat:127074244 395.586