Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02091 ATGGGATTTAGTTTTAAGCACCAGCTTGGCCTTGTTTGTGTCGTACTGCTCCTTCCTGCACTTTGTAACTGCAAGGAATATTTTACTCAATCCAGAGCATCCTATTATGGCAGCCCTGATGGCTATGGGCATCCAAATGAAGCTTGTGGATTTGGCGAGTATGGAAGGACAGTAAATGATGGCAAGGTCACAGATGTGTCGGCTAGGCTATGGAAAAATGGTGGTGGTTGTGGTGCATGTTATCAAGTTAGGTGCAAAATACCCCAATTATGCAGTTACAATGGGGCATTTGTGGTGACAACAGGCTATGGTGAGGGAGATAGAACAGACTTTATCATGAGTCCACGTGGCTTCTCAGAATTGGGACGTAACAAAAATGCATCTGATGAGTTGTTCAAATATGGTGTAGTTGATGTTGAATACAAAAGGGTCCCTTGTACATTCAAGGGCAATGATAACATCATGTTTAAGATCAATGAACATAGTCAAAATCCTGGCTACTTTGCTATCGTGGTTCTTTATGTAGGAGGAACAAACGACATCACTACTGTTGAGATGTGGCAGATAGATCACAACCAATGGGAGCCCCTGCGTAGGTCCTATGGTGCAGTGTTTGACTATGCTAACCCACCACGAGGTGCAATCCCCTTGAGGTTCAAATTGGGCAGTTCAAGACCTAAGTTGTGTTCCTTGATCACTATCCCTGGTAATTGGAAGGCTGGGGCTACTTATACCGCCAAGATTCGACCTTGTTATTATTAG 762 0.4383 MGFSFKHQLGLVCVVLLLPALCNCKEYFTQSRASYYGSPDGYGHPNEACGFGEYGRTVNDGKVTDVSARLWKNGGGCGACYQVRCKIPQLCSYNGAFVVTTGYGEGDRTDFIMSPRGFSELGRNKNASDELFKYGVVDVEYKRVPCTFKGNDNIMFKINEHSQNPGYFAIVVLYVGGTNDITTVEMWQIDHNQWEPLRRSYGAVFDYANPPRGAIPLRFKLGSSRPKLCSLITIPGNWKAGATYTAKIRPCYY. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02091 253 Gene3D - 145 247 IPR036749 -
Seca12g02091 253 PANTHER EXPANSIN-B3 16 248 - -
Seca12g02091 253 Pfam Expansin C-terminal domain 154 224 IPR007117 -
Seca12g02091 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Seca12g02091 253 Pfam Lytic transglycolase 65 141 IPR009009 -
Seca12g02091 253 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Seca12g02091 253 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Seca12g02091 253 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Seca12g02091 253 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Seca12g02091 253 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Seca12g02091 253 SUPERFAMILY Barwin-like endoglucanases 14 151 IPR036908 -
Seca12g02091 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 246 IPR007117 -
Seca12g02091 253 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Seca12g02091 253 Gene3D - 25 144 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02091 Seca-Chr12 26112574 26114281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02091 1 248 Expansin Gene Family AT4G17030 51.600 5.61e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02091 - - psat:127074244 360.533