Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02089 ATGGCCACTCTGTTTTTACTAGCTTTTCTTCTCCAGTTCTCATCACAGCAGATCCCCGCACTCGGGTACAATCGCCCTGACAACAACAGCAATACAGAAAGCAATCAGTCACTAGTGCCTTCATCTCTCTACCAAACAGCGAGGATTTTTGGCAGTCAATCTTGGTATGAGTTCAGTAATGTCACAAATGGCACTACCTGGTACGCTTCCACTTCTTTGCTTTCTCTTCACCAAGCAATCTTTCCACAGCTAGGTTCAATGTTTCCATTCCTAGATTCTGTTCTCTTGGACCTGGAGGAATCTAAGCATAATCGTCTATCTGTGCTGCTGGGTTCAGTTCTTGGAGGTTTAGTAATGGTTTCAGTTGGGTTTCTTTGGCTTCACAAAATCATGAGTACTCCTAGGAGATTGACTGTGGGAACCATTCAAGGCTCCTTTCTACCAAACATAAATCTTGGGTCCTTGCTTGATCTTCAATTGGCAACAGAGAATTTTGATGCAAAGTGGATAATTGGCAGAGGTGGTTTTGGCAATGTATATAAAGGAATTCTAAAAAATGGCATGAAAGTAGCCGTGAAAAGAAGTGAGCTGGGATCAGGTCAAGGCCTTCCAGAATTTCAAACAGAGATCAAGGTATTATCCAAGATTGATCACAAGCACCTTTACTACGCCAAATTTAGGATATGA 687 0.4221 MATLFLLAFLLQFSSQQIPALGYNRPDNNSNTESNQSLVPSSLYQTARIFGSQSWYEFSNVTNGTTWYASTSLLSLHQAIFPQLGSMFPFLDSVLLDLEESKHNRLSVLLGSVLGGLVMVSVGFLWLHKIMSTPRRLTVGTIQGSFLPNINLGSLLDLQLATENFDAKWIIGRGGFGNVYKGILKNGMKVAVKRSELGSGQGLPEFQTEIKVLSKIDHKHLYYAKFRI. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02089 228 Gene3D Phosphorylase Kinase; domain 1 135 223 - -
Seca12g02089 228 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 221 - -
Seca12g02089 228 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Seca12g02089 228 SUPERFAMILY Protein kinase-like (PK-like) 137 221 IPR011009 -
Seca12g02089 228 Pfam Protein tyrosine and serine/threonine kinase 170 221 IPR001245 GO:0004672|GO:0006468
Seca12g02089 228 FunFam receptor-like protein kinase FERONIA 135 223 - -
Seca12g02089 228 ProSiteProfiles Protein kinase domain profile. 165 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02089 Seca-Chr12 26081993 26085464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02089 123 221 Receptor kinase-like Gene Family AT2G23200 48.113 7.73e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g02089 PK_Tyr_Ser-Thr 3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02089 - - gmx:100305412 137.887