Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02082 ATGAAAATCTCCTTGCTTGATCTTCAATTGGCAACTGAGAATTTTTATGCAAAGTGGATAATTGGCAGAGGTGGTTTTGGCAATGTCTATAAAGGAGTTCTAAAAAATGGCATGAAAGTGGCTGTGAAAAGAAGAGTAGCTGGAGGAATCATTCACCGTGATGTGAAATCCACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCATTTCAAGGACAGGTTCTCTTGACCATCATCAACCATATGTCAGCACAGATGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTTATGTCACAACAGCTGACAGAGAAATCTGATGTCTATTCATTTGGGGTTGTTCTTCTTGAAGTGTTATGTGCATGA 387 0.3928 MKISLLDLQLATENFYAKWIIGRGGFGNVYKGVLKNGMKVAVKRRVAGGIIHRDVKSTNILLDENLVAKVADFGISRTGSLDHHQPYVSTDVKGTFGYLDPEYFMSQQLTEKSDVYSFGVVLLEVLCA. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02082 128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Seca12g02082 128 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02082 128 SUPERFAMILY Protein kinase-like (PK-like) 4 127 IPR011009 -
Seca12g02082 128 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Seca12g02082 128 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 44 - -
Seca12g02082 128 Gene3D Transferase(Phosphotransferase) domain 1 3 46 - -
Seca12g02082 128 Pfam Protein tyrosine and serine/threonine kinase 50 127 IPR001245 GO:0004672|GO:0006468
Seca12g02082 128 Gene3D Transferase(Phosphotransferase) domain 1 47 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02082 Seca-Chr12 25998600 25999742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02082 7 44 Receptor kinase-like Gene Family AT5G61350 50.000 9.79e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g02082 PK_Tyr_Ser-Thr 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02082 - - lja:Lj0g3v0255899.1 152.525