Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02077 ATGAAAGTGGCTGTGAAAAGAAGTGAGCTAGGATCATACCAAGGCCTTCCAGAATTTCAAACAGAGATCAAGAGGCTGGAAATTTGCATTGGTGCTGCCTGGGGTCTTGATTACCTTCATAAAGGAGTAGCTGGAGGAATCATTCACCGTGATGTGAAATCCACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCATTTCAAGGACAGGTTCTCTTGACCATCATCAACCATATGTCAGCACAGATGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTTATGTCACAACAGCTGACAGAGAAATCTGATGTCTATTCATTTGGGGTTGTTCTTCTTGAAGTGTTATGTGTATGA 378 0.4153 MKVAVKRSELGSYQGLPEFQTEIKRLEICIGAAWGLDYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGISRTGSLDHHQPYVSTDVKGTFGYLDPEYFMSQQLTEKSDVYSFGVVLLEVLCV. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02077 125 PANTHER OS07G0166700 PROTEIN 24 124 IPR045272 GO:0004714|GO:0006468
Seca12g02077 125 Gene3D Transferase(Phosphotransferase) domain 1 13 125 - -
Seca12g02077 125 SUPERFAMILY Protein kinase-like (PK-like) 19 124 IPR011009 -
Seca12g02077 125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Seca12g02077 125 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02077 125 Pfam Protein tyrosine and serine/threonine kinase 23 124 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02077 Seca-Chr12 25974456 25975488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02077 2 125 Receptor kinase-like Gene Family AT5G59700 51.429 1.75e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g02077 PK_Tyr_Ser-Thr 1.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02077 - - lja:Lj0g3v0255899.1 186.808