Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02068 ATGGAACTTAGTTTTAAGCACCAACTAGGCCTTGTTTGTGTCATACTGTTCTTTCCTGCACTTTCTAACTGTCAGGAATATTTTACTGCATCCAGAGCAACCTATTATGCAGCCCCTGATGGCTCTGGGACTCCAAGGGGAGCTTGTGGCTTTGGTGATTGTGGAAAGACCTTGAATAATGGCAGTGTCACAGCTGTGTCTGCTAAGCTATGGAAGAGTGGAGGCGGCTGTGGTGCATGCTATCAGGTTAAGTGCAAAATACCACAATACTGTGATGACAATGGAACAATTGTATTAGTAACAGACCAAGGTGAAGGAGACAGAACAGACTTCATCATGAGCCAACGTGGCTTCTCAAAATTGGGACGCGATTCAGCTTCATCTGAAGAGCTATTCAAATATGGTGTAGTGGATGTTGAATACAAAAGGGTCCCCTGTACATTCAAGAGTGATAGCATCATTGTGTTTCAGATCTATGAAAGCAGTAGCAACCCTGGCTACTTTTCTATAGTGATTCTCTATATAGGTGGAATATATGACCTCACTGCTGTTAAACTGTGGCAGAGCGATCACCACCAATGGGAGCCCCTGAACAGGTCTTATGGCGCAGTGTTTGCCTTTTCTAACCCACCAAGAGGTGACATCCAATTGAGGTTTGAATTGAGCAGCAGTGCAGGGTTGATGCATGCCTCGTTCACAGTGGAGAGTAGTTGGCAGGCTGGAGAGCTTTATGCCACTAAGATTCAACCTAATTAG 756 0.4484 MELSFKHQLGLVCVILFFPALSNCQEYFTASRATYYAAPDGSGTPRGACGFGDCGKTLNNGSVTAVSAKLWKSGGGCGACYQVKCKIPQYCDDNGTIVLVTDQGEGDRTDFIMSQRGFSKLGRDSASSEELFKYGVVDVEYKRVPCTFKSDSIIVFQIYESSSNPGYFSIVILYIGGIYDLTAVKLWQSDHHQWEPLNRSYGAVFAFSNPPRGDIQLRFELSSSAGLMHASFTVESSWQAGELYATKIQPN. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02068 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Seca12g02068 251 SMART dpbb_1 63 141 IPR007112 -
Seca12g02068 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 246 IPR007117 -
Seca12g02068 251 PANTHER EXPANSIN-B3 18 249 - -
Seca12g02068 251 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Seca12g02068 251 SUPERFAMILY PHL pollen allergen 160 245 IPR036749 -
Seca12g02068 251 Gene3D - 149 250 IPR036749 -
Seca12g02068 251 Pfam Expansin C-terminal domain 154 223 IPR007117 -
Seca12g02068 251 Gene3D - 19 147 IPR036908 -
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Seca12g02068 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Seca12g02068 251 Pfam Lytic transglycolase 64 141 IPR009009 -
Seca12g02068 251 CDD DPBB_EXLB_N 29 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02068 Seca-Chr12 25878014 25879930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02068 1 248 Expansin Gene Family AT4G17030 43.600 5.11e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02068 - - psat:127074244 353.599