Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02067 ATGAGTCCACGTGGCTTCTCAAGATTGGGACATAACCCAAATGCATCAGCAGAGTTGATCAAATATGGTACAGTAGATGTTGAATATAAACGGGTCTCATGTACATTTAATGGTTATAACATTAAGTTTCAGATCCAAGAAAGTAGCAGCAATCCTGGCTACTTTTCTATCGTGGTTCTCTATGTAGGTGGAACATATGACATTAATGCTATTGAGATGTGGCAGAGAGAAAACCAATGGCAACCCTTGCATAGGAACTATGGGGCAGTGTTTGACTATTCTAACCCACCAAGAGGTGATATCCACTTGAGGTTCAAATTGAGTGGTTTTAAGTCAGCTTGGTTTTCCGTCCCCAGTAACTGGAAGGCTGGAGATACTTATAGCACAAGTATTCTGCCTAATTAG 405 0.4074 MSPRGFSRLGHNPNASAELIKYGTVDVEYKRVSCTFNGYNIKFQIQESSSNPGYFSIVVLYVGGTYDINAIEMWQRENQWQPLHRNYGAVFDYSNPPRGDIHLRFKLSGFKSAWFSVPSNWKAGDTYSTSILPN. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02067 134 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 53 129 IPR007117 -
Seca12g02067 134 SUPERFAMILY PHL pollen allergen 40 128 IPR036749 -
Seca12g02067 134 Gene3D - 33 130 IPR036749 -
Seca12g02067 134 PRINTS Expansin/Lol pI family signature 115 129 IPR007118 GO:0005576
Seca12g02067 134 PRINTS Expansin/Lol pI family signature 80 94 IPR007118 GO:0005576
Seca12g02067 134 PRINTS Expansin/Lol pI family signature 22 38 IPR007118 GO:0005576
Seca12g02067 134 Pfam Expansin C-terminal domain 41 108 IPR007117 -
Seca12g02067 134 PANTHER EXPANSIN-B3 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02067 Seca-Chr12 25850107 25853790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02067 1 132 Expansin Gene Family AT4G17030 42.029 2.23e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02067 - - psat:127135298 169.088