Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02064 ATGGGCAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAAGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAAATGTTGAGTATGAGGACCCGAAGGTTTCCAGGGTGAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGCGAAAACTGAACCATGATAATGCTGCATCTGGAGGGCTCACCCCTGATTACAATCAAGGATTCCAAAAGGTTTTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATATCTAACTCAGAGAGCTGTGCTCAATTTGGTGGTACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCGAAAAAGAGGACATGTGCTGGTCGTCCAAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTATGTACTATCCTTCATGAACAACAGTCTTATTTTTCTGCTTCTTCTGAAGAGGATCTTCTTTTTGAAAGCGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTTATAAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTGATGAGTGAGGCATATTCATGTTCTGCTACCATTCCTATGCATAGTGATTGCAGTGGCATGAATTTCTCATCCCAGGGAGTTGAAAAGGTCAGAAACTCCGTTGGCTATACAATACCACAGGAGCAACTTGGAAGGCATGTTTTTGTACACCAGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGCGCTCAATAGATTTGAATGATGTAGTCAACTATGAGGAGTTTTTGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCCAAACTTCCTGATAGCCTTAAAATCATGTTCGATAGCTGTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTTGGGGAAGGTGTATTTGATATCTCCTTGTTGGGGGCAAAACCTGAGGACTGCAAGATGTTGAAAAGGTTTGCATTATCTGATCTGTCAAAGTCAAAATGGGTTGAGCACTACCATTTTCTCAAGATGCAGAGATATAAAAATAAGCCTGGAAAATGCGTTGATCAGGGATCTACTGCTGTGGCATCAAGCAGTGCTGCAAATTTCAAGAGATACCGTGACAGCCAAAATCAAAACTCACCAGAACTGAAGATAACAATGAGGAGCCCCAAAAGGTTGATCATAAAAACTAGCTGTGAGGGCAAAGAAGTTGTAGAAGATGGCTCTAGCTTCAGCCCAAAAAGCCTATTTGCATTGCCTCGTGATGGTAGCTTGCGCGTGCTGGATTCTCTAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCCATCTAATAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCTACTTTAAGCTCTGGTGCTCATGCCAGCACCAGTAGCAGCTCAGCATACTCACATGTTGCTCATCCTTAA 1647 0.4293 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVEYEDPKVSRVKSISLNKNKEVKLVKRKLNHDNAASGGLTPDYNQGFQKVLDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKHSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQCLMSEAYSCSATIPMHSDCSGMNFSSQGVEKVRNSVGYTIPQEQLGRHVFVHQDKSQLEKLEVLGNHDSPLRSIDLNDVVNYEEFLRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFDSCQFKENLTYFQQLLGEGVFDISLLGAKPEDCKMLKRFALSDLSKSKWVEHYHFLKMQRYKNKPGKCVDQGSTAVASSSAANFKRYRDSQNQNSPELKITMRSPKRLIIKTSCEGKEVVEDGSSFSPKSLFALPRDGSLRVLDSLNFVDESSDQDLLLEVPSNSSFPQAELLHPTLSSGAHASTSSSSAYSHVAHP. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02064 548 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 301 413 IPR044867 -
Seca12g02064 548 MobiDBLite consensus disorder prediction 528 548 - -
Seca12g02064 548 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Seca12g02064 548 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Seca12g02064 548 PANTHER OSJNBB0038F03.10 PROTEIN 1 546 IPR044589 -
Seca12g02064 548 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Seca12g02064 548 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Seca12g02064 548 Pfam Asx homology domain 289 373 IPR028020 -
Seca12g02064 548 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Seca12g02064 548 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Seca12g02064 548 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Seca12g02064 548 Gene3D - 291 398 IPR038108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02064 Seca-Chr12 25606273 25612792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02064 1 525 C2C2-Gata Transcription Factor Family AT4G17570 52.700 2.38e-152 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g02064 ASXH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02064 - - gmx:100799745 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02064 12 25606273 25612792 Seca12g02064 12 25606273 25612792 PCT