Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02039 ATGGATCAAGAAGGAATAGTGGCTCATGGTGGGCCTTCAAATGATGTTGCTTCTGGCCATGAATGTGGTCAACCCACAGATCACACATTGAAGAATACAAAAGATATCTTGGACAACCAACCCGAAGTTTGTGAACCAGCAGTTGGCATGTCATTTCATTCCATGGAAGCCGTAAAATCATTCTATCGACAATATGCTGTAAGAAAAGGTTTTAAGATCATTATAAGAAACTCAAGAAAAGGACCTGATAAAAAAATAAAATACTTCATCTTGGCATGTTCAAGACAAGGTAATTATGTTTCAATGGTACCTAAAGATTTGAAGACATTTCCGACAATAAGGAATAAATGTCCAGCAAAAATCACAGTGGCATTGAAAGATGGACTTTGGCACATCAAGTCAGTTAATGCTGACCATTGTCATGTCCTTAGCCCTAGTAATTCTAGGTTGCTTCATGGGAACAAAAACATGGGTATGCACATGAAGAGAACTATTCAGATAAATGATGAAGCAGGTGTGAGGTTGAACAAAAGCTACCATTCTGTTGTTTATGATGCGAGAGGATGTGAAAATATGTCATTACTTGAACAAGACATAAGGGACTTTGTAGGAAGGGAAGGTGCTGGTAAGACACTATTAACATATTTTGCGCGAATGCAGCAATACAATAACAACTTCTTTTATGAAATTGATTTGGATGATAACTTCCATGTGAAGAATGTTTTTTGGGCTGATGCAAGAAGTAAGGCTACCTATGAGTACTTTGGAGACATTGTGTCTTTTGACACAACCTGCTTGACAAATAAGTATGATATGGCATTGGCACTATTTGTTGGAGTTAATCATCATGGCCAGTCAATTTTGCTAGGGTGTGGCTTGCTATCTGCTAAAGACACTGAGTCATTTGCATGGTTGTTTCAATCTTGGCTTCGTTGTAGGTCAGGAAAGGCCCCGGAAGGTATTGTCACTGACCAATGCAAGGCAATACAAAATGCTGTCGAGTTAGTTTTTCCTAATGCTCGACATAGGTGGTGCTTATGGCATTTAAAGAATAAAATACCTAAAAAGTTAAAAGGTTTTGCTGAATACAAGCATATGAAGGATGCAATGAAATTTGCAATTTATGACTCCTTGACCGTGGATGAATTTGAAAGTAATTGGACTAGTTTCATTGACAAATTTGGTTTGGGAGACAATGACTGGTTGAGTGGCTTGTACAAAGAACGATCAAAATGGGTGCCATGTTTTTTAAGGCAGGATTTTTGGGCTGGAATGTCAACCACACAGAGAAGTGAAAGTATCCATGCCTTTTTTTATGGATATGTAAATGCAACAACACTCCAACAGTTTGTAAGGCAATATGACAAGGCCCTCCAGGACAAAGCGGAAAAGGAATGTGAGGCTGATTTTCGATCATTCAACTCCACAATTCCTTGTGGGTCAAATTCCATGATTGAGCGGCAATTTCAAGCTGAATACACTCACATGAAATTTAATGAGGTTCAAGCTGAATTTCGAGCAAAAATGAATTGTTGTGTTAGTAGCATGTCTATGGATGGTTCCAAATGTACATATGATGTGATGGAGGAGATGATTGTTGTTGGGCATCCAAAAGAAGCCATTTTTCATGTGGTATTCAATCGTGATAATCATGATGTTAAGTGTAGTTGTTTACTATTCGAGTTTAAAGGCATAATGTGTAGACATTCACTTGTTGTCCTTGCTCAAGAAAGGGTGAAAGAAGTATCATCGAAGTATGTTTTGAACAGATGGAGCAAAAATGTACAAAGGAAATATATGTACATGAAGACTAGTTATGATGTTAAGTAG 1830 0.3781 MDQEGIVAHGGPSNDVASGHECGQPTDHTLKNTKDILDNQPEVCEPAVGMSFHSMEAVKSFYRQYAVRKGFKIIIRNSRKGPDKKIKYFILACSRQGNYVSMVPKDLKTFPTIRNKCPAKITVALKDGLWHIKSVNADHCHVLSPSNSRLLHGNKNMGMHMKRTIQINDEAGVRLNKSYHSVVYDARGCENMSLLEQDIRDFVGREGAGKTLLTYFARMQQYNNNFFYEIDLDDNFHVKNVFWADARSKATYEYFGDIVSFDTTCLTNKYDMALALFVGVNHHGQSILLGCGLLSAKDTESFAWLFQSWLRCRSGKAPEGIVTDQCKAIQNAVELVFPNARHRWCLWHLKNKIPKKLKGFAEYKHMKDAMKFAIYDSLTVDEFESNWTSFIDKFGLGDNDWLSGLYKERSKWVPCFLRQDFWAGMSTTQRSESIHAFFYGYVNATTLQQFVRQYDKALQDKAEKECEADFRSFNSTIPCGSNSMIERQFQAEYTHMKFNEVQAEFRAKMNCCVSSMSMDGSKCTYDVMEEMIVVGHPKEAIFHVVFNRDNHDVKCSCLLFEFKGIMCRHSLVVLAQERVKEVSSKYVLNRWSKNVQRKYMYMKTSYDVK. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02039 609 Coils Coil 447 467 - -
Seca12g02039 609 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 601 IPR031052 GO:0006355
Seca12g02039 609 Pfam FAR1 DNA-binding domain 60 144 IPR004330 -
Seca12g02039 609 Pfam MULE transposase domain 258 351 IPR018289 -
Seca12g02039 609 SMART 26again6 553 580 IPR006564 GO:0008270
Seca12g02039 609 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g02039 609 ProSiteProfiles Zinc finger SWIM-type profile. 542 578 IPR007527 GO:0008270
Seca12g02039 609 Pfam SWIM zinc finger 554 574 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02039 Seca-Chr12 24925299 24927128 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02039 MULE 4.7e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02039 - - gmx:102667848 752.281