Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02034 ATGGGTGGAATTCTTTGTGACTGCTGCCAGAGGAAGTTTTCAGTGTGGGAATTTGAGGAGCATGTTGGAAGTGATCTTGGACAACCCTATAAATGTATTTACCTTCACGAAAGACACATGTCCCTCCACAACCTCCTAATTATTGCCTTGCAAGATGCTAGCGAACTAAAACGAAAGTATACATATTCATATGTATGCAACGAAAGTGCCACAGATCAAAATGATGATGCATGTGCAATATGCGGAAATGGGGGAGACTTAGTATGCTGTGACACGTGTCCTTCTGCGTATCATTTGTCCTGTGTGAATATAGAGGTTCCCCAAAGTGATTGGTTATGTCCATATTGCTTATGCAAATATTGTGGGCTTGGTGAAGAGAGTAAAGAATTCATCACGTGCGTCCAATGTGATAAGAAGTTTCACCGGGGGTGCTTTGAAAAATTTGAAGAAGAATTCTCAAAAAAGACCCTACAACCTGAGTGTTCAAGATTATATTGTGGACCAGACTGCAAAGATATATACGAGAAATTGGAGGGCTCACTTGGAGTTAAAAATGACATGATTAGCGACTACTCTTGGAGAGTTATCCGCAAAATGGATATGACCTTTGATGCTAAGAGCCAAGATATAGAAAATAATTCAAAGGTTGCAGTTGCATGGATGTTAATGAATGAAGCTTTTGAGACAATAATCGACAAATACACAGGAATCAATGTGCTTCAAAGTATAGTTTACAGTTGTGGATCAAACTTAACCAGGATTAATTTTAGTCGTTTCTATACATTTGTCATGGAGAAAGATGATGAAATAATTTGTGCAGCTACTATAAGATTACATGGGAGAGGGATTGCAGAAATGCCTTTTATTGCCACAGATAACGAGTATAGAGGACAAGGAATTTGCCAGTTATTAATGAGGGAAATTGAATCGTTCCTATGTAGCCTCAAAGTCAAAAGCTTGATCATTCCATCTGTTCCAAAGACTTCTAGGATGTGGAAGCGCAAATACGGCTTTAAGGTGCTTAGTAAAAAGTTGAAGAGAGAAATATCCCCTTATAACATTTTGATGTTCCATCATACTATAATATTGTGCAAGGACTTGTCCACAAGCATAGCAGGTAAAAATCTCTCTTTTTTCTCTCATTTTCTTTCTCTCCTATATATGTCAATTTTTTTCTCTATTTCATTCATGGTTCCCTTTTACAGACTTTCATCATAA 1218 0.3752 MGGILCDCCQRKFSVWEFEEHVGSDLGQPYKCIYLHERHMSLHNLLIIALQDASELKRKYTYSYVCNESATDQNDDACAICGNGGDLVCCDTCPSAYHLSCVNIEVPQSDWLCPYCLCKYCGLGEESKEFITCVQCDKKFHRGCFEKFEEEFSKKTLQPECSRLYCGPDCKDIYEKLEGSLGVKNDMISDYSWRVIRKMDMTFDAKSQDIENNSKVAVAWMLMNEAFETIIDKYTGINVLQSIVYSCGSNLTRINFSRFYTFVMEKDDEIICAATIRLHGRGIAEMPFIATDNEYRGQGICQLLMREIESFLCSLKVKSLIIPSVPKTSRMWKRKYGFKVLSKKLKREISPYNILMFHHTIILCKDLSTSIAGKNLSFFSHFLSLLYMSIFFSISFMVPFYRLSS. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02034 405 Pfam Acetyltransferase (GNAT) domain 254 344 IPR000182 GO:0016747
Seca12g02034 405 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 222 342 IPR016181 -
Seca12g02034 405 SMART PHD_3 77 117 IPR001965 -
Seca12g02034 405 SMART PHD_3 118 171 IPR001965 -
Seca12g02034 405 Gene3D - 195 351 - -
Seca12g02034 405 ProSiteProfiles Zinc finger PHD-type profile. 75 119 IPR019787 -
Seca12g02034 405 Pfam PHD-finger 78 118 IPR019787 -
Seca12g02034 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 128 IPR013083 -
Seca12g02034 405 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 221 361 IPR000182 GO:0016747
Seca12g02034 405 PANTHER PHD FINGER PROTEIN 12 3 369 IPR042163 GO:0003714|GO:0045892
Seca12g02034 405 CDD NAT_SF 262 322 - -
Seca12g02034 405 Pfam Tify domain binding domain 3 46 IPR032308 -
Seca12g02034 405 SUPERFAMILY FYVE/PHD zinc finger 53 118 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02034 Seca-Chr12 24812322 24814729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02034 3 367 PHD Transcription Factor Family AT4G14920 40.106 6.79e-87 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca12g02034 Acetyltransf_10 2.7e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02034 - - lja:Lj0g3v0191649.2 463.766