Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02033 ATGGGATTTGACAGTGAAAAAGATTTTGTTAATGTTGATCCTAGTTTGCTTACTGCTGAACTTGTTATGACATTTCACTTCTCAAACCTTGAGATGGCTTATAATTTCTATAATTGGTATGGGAGGATATTAGGTTTTTCTGCTCGTAAGGGTAAAGTTAGGAAAAACAAGGATTTTGAAATTGTGGAGAAGACATTTTTTTGTCACAGGGAAGGAAAGAGGAAGAAAAAAGAAGAGGACCGAGAGGAACAAGAGGAAGAAGCTCAAACAACACGTGAATGTAGGCCGGAGACGAGAACTGGATGTCGTGCAAAAATGAAGGTACGCCTTGATGGTATTAGTGGGAGATGGCGTGTGTCTAAGTTTGTAGGTGCACATAATCATGATCTATTAGAAAAAATACATGCATCCATGCTACCTGCTCATAGAAAAATGACTGATGCTGACATTATGCAAATAAACAACTTACGCATGGTAGGTATAAGTACCCCCCACATTTATGGGACATTTGCAACTCAATCAGGAGGCTTTCAACATGTGGGATTTTCTAAAAGAGATATTTATAATGAAATTGGTAGGCAAAGAGTGATGCAGGGTAGTGATGTTAAGGGTGCATTTCAGTACCTTCGTGATAGAGGGTCTGCTGAAGGTCCAATTTTTTGGAGCCACACACTTGATAGTGAAGGTAGGCTTATGCGCTTATTTTGGTGTGATGGACATAGTCAAGTTGACTACAAGGTTTTCGGAGATGTTTTAGCATTTGATGCTACTTACAAAACGAACAAGTATCACTTTCCTCTGGTTGTTTTTTCTGGTATAAACCATCACAACCAGACAACTATTTTTGCCAGTGCTGTTATTGCTGATGAGACTGAAGAGACGTATGTCTGGTTACTTGAACAATTAATGGTTGCAATGAAAGGCAAGGCACCGTTGTCAGTTATTACCGATGGAGATCTTGCAATGAAGAATGCCATCAAAAGAGTTTTTCCAAATGCACATCACAGGTTGTGTGCATGGCATCTTCTACGAAATGCTAATACCAATGTGAAGAATCCTAGGTTCCTTGCAGTGTTTAAGAAATGCATGCTGGGTGATTATGAGATTTATGAGTTTCAACATAGGTGGGTGAAAGTGGTAACGAAGTGTGGTCTTGAAGAAAACACGTGGGTGAAAGATGCGTATGAAAGAAGGAGCATGTGGGCCACTTGCTATATTAGGGGTACATTTTTTGCAGGGATAAGGACAACATCTAGGTGTGAGGGGTTGCATGCGCAATTTGGGAGGTTTGTCCATTCACGACATGGCTTGGTAGATTTCTTGCAGAATTTTCACCATTGCCTTGAATACTTTCGTTACAAGGAAATTGAGGCGGACTACGCCTCTTTGGTAGGCCAACCGGTTCTACGAACAAACTTGCATGCATTAGAGAGGTCTGCATCTAGATTGTTCACAAGGGAGATCTTTAAGTTAATTCGTCCTGCACTTGCAAAAGGTAGCACTGTGAGGGTCAAGAGTTGCACCAATTAA 1530 0.4059 MGFDSEKDFVNVDPSLLTAELVMTFHFSNLEMAYNFYNWYGRILGFSARKGKVRKNKDFEIVEKTFFCHREGKRKKKEEDREEQEEEAQTTRECRPETRTGCRAKMKVRLDGISGRWRVSKFVGAHNHDLLEKIHASMLPAHRKMTDADIMQINNLRMVGISTPHIYGTFATQSGGFQHVGFSKRDIYNEIGRQRVMQGSDVKGAFQYLRDRGSAEGPIFWSHTLDSEGRLMRLFWCDGHSQVDYKVFGDVLAFDATYKTNKYHFPLVVFSGINHHNQTTIFASAVIADETEETYVWLLEQLMVAMKGKAPLSVITDGDLAMKNAIKRVFPNAHHRLCAWHLLRNANTNVKNPRFLAVFKKCMLGDYEIYEFQHRWVKVVTKCGLEENTWVKDAYERRSMWATCYIRGTFFAGIRTTSRCEGLHAQFGRFVHSRHGLVDFLQNFHHCLEYFRYKEIEADYASLVGQPVLRTNLHALERSASRLFTREIFKLIRPALAKGSTVRVKSCTN. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02033 509 Coils Coil 74 94 - -
Seca12g02033 509 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 504 IPR031052 GO:0006355
Seca12g02033 509 Pfam FAR1 DNA-binding domain 35 131 IPR004330 -
Seca12g02033 509 MobiDBLite consensus disorder prediction 72 95 - -
Seca12g02033 509 Pfam MULE transposase domain 251 345 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02033 Seca-Chr12 24765893 24767422 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02033 FAR1 4.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02033 - - tpra:123913749 559.681