Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02027 ATGGATATGGACCCTACCGATTCTTCTCATATGAATAAAGAGATTGATTTCAATTCAGACAAGGGACTGGTAATACAATCAGACATTCTTGATGTTCCACAATATTCTACCGTTGAAGAACTTAATCTTGAACCTCATATTGGAATGGAGTTTGACTCATTAGAAAGGGTTCAAGAATTTTATAAATTTTTTGCAAAGGCAAAAGGATTTAGGATTCGTACCCGCTCTAGCAAAAAGAATTATTGCATTTTTGTATGTGTTAGGGAAGGTGAACATAAGGTGAAAAGTGGTAAAATTGAAAGTAATCATGGTAGCATGAGAGAAGTTAAGAAAAAATGTTCAACTATTCGCATTGGATGTCAAGCATCACTTGTTGTGTCAAAGGATAAGAAACGAGACATGGAAGTTATAAAATCTTTTGATAATAATCATAATCATGTCATGTGTGATGATGATGCTAGAATGGTATTTTTTTTCGTGGATGCTAGATCAAGTTTCGCTTACCAATATTTTGGAGATGTTGTTACCTTTGATGCAACATAA 543 0.3352 MDMDPTDSSHMNKEIDFNSDKGLVIQSDILDVPQYSTVEELNLEPHIGMEFDSLERVQEFYKFFAKAKGFRIRTRSSKKNYCIFVCVREGEHKVKSGKIESNHGSMREVKKKCSTIRIGCQASLVVSKDKKRDMEVIKSFDNNHNHVMCDDDARMVFFFVDARSSFAYQYFGDVVTFDAT. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02027 180 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 180 IPR031052 GO:0006355
Seca12g02027 180 Pfam FAR1 DNA-binding domain 59 148 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02027 Seca-Chr12 24685048 24685864 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02027 FAR1 1.3e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02027 - - aprc:113859540 124.405