Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02022 ATGCATATAGAGGAATTGAAAGGAGGTGAGGTGGGGGAAGGTGGAGAGGAAGGGAGATCGAGCTTTGTTGGTTATGATACCAAGAGGGTTCTGGTTGGAGCAGGCGCTCGTGCCCTCTTCTATCCCACCCTGTTTTACAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGGCTTCTCCCAATTCTGATGCACTTAATTTTCAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATACGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCATTGCATAACATACACCGAGCTGTGGACTTTATACATGAAAATGCATTGTCTGGACGCACTACATATGTTCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGACACCTGATGCTGCATATGAATATGTGAAGTCAATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAGGAATACTACCACCATCTTATGATGAGGAGGGCTGTTGGATGTGCTCCTACAGCCGATCTATTACTAAAGGCTTCCAGGGTTGCAGCAGCTTCACGAGATCTTGTAAAGTTTGATGACAGTTCTGTAGTCGTGGTAACTGAGCAAGATCTTGAAGGATACGACCCAAGTTGTCAATCAGGAACCATGACAAGTGAAATATGGGCAGATTTAAGCGTTGTTTACCGTGTGCGAGTTGCTGGACAGGCAGCATTGGCAAGAATATCATGCCTTTGGCTGCGATATGGTACCGACCAGAAGATTTCTGCGGAGAGGGAAAACAGTTGCTCAATGAGGACGAATCACTTGGGAGGAATTAGTGTTGATATCCACGTGTACTGA 1005 0.4537 MHIEELKGGEVGEGGEEGRSSFVGYDTKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEASPNSDALNFQFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHNIHRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMTPDAAYEYVKSIRPRVLLASSQWQAVQEYYHHLMMRRAVGCAPTADLLLKASRVAAASRDLVKFDDSSVVVVTEQDLEGYDPSCQSGTMTSEIWADLSVVYRVRVAGQAALARISCLWLRYGTDQKISAERENSCSMRTNHLGGISVDIHVY. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02022 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 159 169 IPR016130 GO:0016311|GO:0016791
Seca12g02022 334 SMART dsp_5 68 214 IPR020422 GO:0006470|GO:0008138
Seca12g02022 334 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 306 - -
Seca12g02022 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 77 216 IPR029021 -
Seca12g02022 334 Gene3D Protein tyrosine phosphatase superfamily 75 221 IPR029021 -
Seca12g02022 334 ProSiteProfiles Dual specificity protein phosphatase domain profile. 67 217 IPR020422 GO:0006470|GO:0008138
Seca12g02022 334 Pfam Dual specificity phosphatase, catalytic domain 93 212 IPR000340 GO:0008138|GO:0016311
Seca12g02022 334 FunFam Dual specificity phosphatase domain protein 59 217 - -
Seca12g02022 334 CDD PTPMT1 59 212 IPR044596 GO:0004721
Seca12g02022 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 206 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02022 Seca-Chr12 24612558 24617137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02022 19 334 Protein tyrosine phosphatase (PTP) family AT2G35680 58.951 3.01e-127 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02022 - - gmx:100790413 557.37