Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02020 ATGGTGGTTGAAAAGGAAGATTTGGGTTTGAGTCTAACCTTGAACCTCTCTCAGAAAACCCCAAATCCTCACCCTCTGAATCTCATGTCCTCTTCTACTTATTCCTCTTCTCCTTCTGGTTGCGAACCTCAGAAACCCTCTTGGAACGACCCTTTCACTTCCTCCGATCGAAACTCGGAAACATGCAGAGGAGAAGCTCGATCATTCCTTCGTGGAATCGACGTGAATCGGTTACCTTCTGCAGTGGATTGTGAAGAAGAAACAGGGGTTTCATCTCCCAACAGCACAGTTTCAAGCGTGAGTGGAAAACGAAGCGAGAGAGAGCCAAACGGTGAAGAGCATGACGTGGACAGAGCATGTTCCAGAGGGATCAGTGATGAAGAAGACGGTGAAACTTCCAGGAAGAAGCTTAGACTCTCCAAAGACCAATCAGCTATTCTCGAAGAAAGCTTCAAAGAGCACAATACCCTCAACCCTAAACAAAAGTTGGCACTGGCAAAGCAATTAGGCCTTCGTCCAAGACAAGTAGAAGTCTGGTTCCAGAATAGAAGAGCTAGAACGAAGCTGAAGCAAACTGAGGTGGATTGTGAGGTGTTGAAAAGGTGTTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACTCCACCAACAACTCTCACTATGTGCCCTTCTTGTGAGCGTGTGACTGTTCCGTCCTCGGCTGTCGATGCTGCAGCCCGGCACCATCCCATGGCCCAAGCCCAGGCCCATCATCGTCCCATACCCATTGGCCCATGGGCTTCTGCTGCTCCTATCCCGCATCGGCCGTTTGATGTGTTCCATCACTGA 888 0.4876 MVVEKEDLGLSLTLNLSQKTPNPHPLNLMSSSTYSSSPSGCEPQKPSWNDPFTSSDRNSETCRGEARSFLRGIDVNRLPSAVDCEEETGVSSPNSTVSSVSGKRSEREPNGEEHDVDRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVTVPSSAVDAAARHHPMAQAQAHHRPIPIGPWASAAPIPHRPFDVFHH. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02020 295 SMART HOX_1 132 194 IPR001356 GO:0003677
Seca12g02020 295 MobiDBLite consensus disorder prediction 84 139 - -
Seca12g02020 295 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Seca12g02020 295 CDD homeodomain 134 191 IPR001356 GO:0003677
Seca12g02020 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 267 - -
Seca12g02020 295 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Seca12g02020 295 MobiDBLite consensus disorder prediction 87 104 - -
Seca12g02020 295 Gene3D - 138 188 - -
Seca12g02020 295 FunFam Homeobox-leucine zipper protein 18 121 195 - -
Seca12g02020 295 MobiDBLite consensus disorder prediction 1 63 - -
Seca12g02020 295 MobiDBLite consensus disorder prediction 11 59 - -
Seca12g02020 295 SUPERFAMILY Homeodomain-like 123 191 IPR009057 -
Seca12g02020 295 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Seca12g02020 295 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Seca12g02020 295 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Seca12g02020 295 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Seca12g02020 295 MobiDBLite consensus disorder prediction 105 139 - -
Seca12g02020 295 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Seca12g02020 295 Coils Coil 189 226 - -
Seca12g02020 295 Pfam HD-ZIP protein N terminus 3 108 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02020 Seca-Chr12 24575414 24577140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02020 1 287 Homeobox Transcription Factor Family AT4G16780 65.972 4.81e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g02020 HD-ZIP_N 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02020 K09338 - gmx:100813367 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02020 12 24575414 24577140 Seca12g02020 12 24575414 24577140 PCT