Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02019 ATGGCTACTCCTGTTGAGCCTCCAAATGGGATCAAAACTGAAGGAAAGCATTACTATTCCATGTGGCAAACCCTGTTTGAGATTGACACAAAATATGTGCCCATCAAGCCTATTGGTCGTGGAGCCTATGGAATTGTGTGCTCTTCTGTGAATAGAGAAACCAATGAGAAAGTTGCAATCAAGAAGATGCAAAATGCCTTTGAGAATCGTATTGATGCACTCAGAACTTTGCGTGAACTGAAACTTCTTCGCCACCTTCACCATGAAAATGTGATTGCTTTGAAAGACATCATGATGCCTATTCATAGGAATAGTTTCAAGGATGTCTATCTGGTCTATGAACTCATGGACACCGACTTGCATCAGATTATTAAGTCTTCTCAAGCACTGTCTAATGATCACTGTCAATATTTCCTCTTACAGGTTTGGTAA 432 0.4028 MATPVEPPNGIKTEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKMQNAFENRIDALRTLRELKLLRHLHHENVIALKDIMMPIHRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLLQVW. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02019 143 FunFam Mitogen-activated protein kinase 18 126 - -
Seca12g02019 143 ProSiteProfiles Protein kinase domain profile. 32 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02019 143 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 142 - -
Seca12g02019 143 SUPERFAMILY Protein kinase-like (PK-like) 24 142 IPR011009 -
Seca12g02019 143 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Seca12g02019 143 Pfam Protein kinase domain 33 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02019 143 SMART serkin_6 32 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02019 143 Gene3D Transferase(Phosphotransferase) domain 1 116 142 - -
Seca12g02019 143 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02019 Seca-Chr12 24566056 24566487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02019 1 142 MAP Kinase Gene Family AT1G59580 85.211 5.44e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca12g02019 Pkinase 3.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02019 K20535 - gmx:100798863 272.322