Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02013 ATGACCCGGCGATGCTCGCATTGCAGCCACAATGGCCACAACTCAAGGACCTGTCCCAATCGCGGGGTCAAGCTCTTCGGAGTCCGATTAACTGACGGGTCGATCCGGAAGAGCGCTAGTATGGGTAATCTCACCCATTATGCTGGTTCCGGGTCCGGACCCCTTCATGCCGGGTCTAATAACCCGGGTTCTCCTGGTGAAACCCCTGATCACGCCGCCGCCGCTGACGGTTACGCTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTAGTTCCCGTGAAAGAAATTTCTTATATGCAGGCGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGTAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACTCCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGTTTGTACCGCATCTGACACTCCAATGGTACAGCAAGACTTCTTGTCAGCTAATCAGCTACCGGCCGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTCCCCTTGATGAAGAGTGTGAATCCATGGATTCTACTAACTCAAATGATGGAGAGCCTGCCCCATTAAAGCCTGATGACAACAACACACAACCTTCTTACCCAGTGTTATATCCTGCATATTATTCTCCATTCTTCCCATTTCCTCTTCCCTATTGGTCTGGATACAGTCCAGAACCCACCAAGAAGGAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCTATTGGAGACTCTGGCCCCTCATCACTGTCTCGAAAACTCATCGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCAAGCATGTGACAGTTCAAATATGAATGGCAGTATCATCCATGCAGTTTAA 1029 0.4762 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERNFLYAGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEVCTASDTPMVQQDFLSANQLPAETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPLKPDDNNTQPSYPVLYPAYYSPFFPFPLPYWSGYSPEPTKKEETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSRKLIEEGPSRQSAFHATQACDSSNMNGSIIHAV. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02013 342 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Seca12g02013 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 151 IPR017930 -
Seca12g02013 342 MobiDBLite consensus disorder prediction 190 234 - -
Seca12g02013 342 ProSiteProfiles Myb-like domain profile. 102 147 IPR001005 -
Seca12g02013 342 SUPERFAMILY Homeodomain-like 100 152 IPR009057 -
Seca12g02013 342 CDD SANT 102 147 IPR001005 -
Seca12g02013 342 Gene3D - 101 153 - -
Seca12g02013 342 MobiDBLite consensus disorder prediction 45 73 - -
Seca12g02013 342 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g02013 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 100 150 IPR006447 GO:0003677
Seca12g02013 342 FunFam transcription factor MYB1R1 101 152 - -
Seca12g02013 342 ProSiteProfiles SANT domain profile. 103 151 IPR017884 -
Seca12g02013 342 PANTHER TRANSCRIPTION FACTOR KUA1 3 280 - -
Seca12g02013 342 SMART sant 99 149 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02013 Seca-Chr12 24432823 24436380 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g02013 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02013 - - ccaj:109807943 609.757