Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02011 ATGGAGATGGAAGAAACTGTCCTTACAGACACTGAAATTCAACCAACCACCTCCTTGTCTTTCACCATTAATATTACATCCTCCACCTCTACCTCTTCTTCTTCCTCCTCCACAGAAGAATCTACAAACAAACTCCACCAAGGCCAAGAATCAAGAAATAATAATGACAAAAAGAAGATGAAAAAGGTTGTGAACAAGGGAAGCAATGATGGGAAGCACCCAACATATAGAGGAGTGCGTATGCGTCAATGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGCACTTTCCCCACAGCAGATATGGCAGCCAGAGCTCATGACGTGGCAGCTCTGACTATTAAAGGTAGCTCGGCTTATCTTAATTTTCCCGAGCTGGCTACAGAGCTGCCACGTCCAGCTAGCAATAGTCCTAAGGACATTCAAGTGGCCGCTGCCTTAGCGGCGGCCACTGATTACCATAGAAGCCATGAAGTAGACTTGGAAGCCGAGTCTGAGCTGAGCCAAGCCGAAGCCGAAACAGAAGCAGTGTCTTCCTCATACTCAAGCCAAACTGAAGGATCATCATCATTGAAGGGTGAGGATGACATGTTTTTGGATCTTCCTGACTTGAATTATCATCATAGTGGTGATGGATTTTATTACTCATCAACTTGGCTTGTAGCTGGAGCTGAACAAATAGACTCTGGTTTTCGGCTTGAAGAGCCTTTTCTATGGGAGTCATATTAA 753 0.4462 MEMEETVLTDTEIQPTTSLSFTINITSSTSTSSSSSSTEESTNKLHQGQESRNNNDKKKMKKVVNKGSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTADMAARAHDVAALTIKGSSAYLNFPELATELPRPASNSPKDIQVAAALAAATDYHRSHEVDLEAESELSQAEAETEAVSSSYSSQTEGSSSLKGEDDMFLDLPDLNYHHSGDGFYYSSTWLVAGAEQIDSGFRLEEPFLWESY. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02011 250 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Seca12g02011 250 MobiDBLite consensus disorder prediction 19 76 - -
Seca12g02011 250 MobiDBLite consensus disorder prediction 19 49 - -
Seca12g02011 250 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 MobiDBLite consensus disorder prediction 50 76 - -
Seca12g02011 250 MobiDBLite consensus disorder prediction 179 199 - -
Seca12g02011 250 MobiDBLite consensus disorder prediction 167 202 - -
Seca12g02011 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 215 - -
Seca12g02011 250 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Seca12g02011 250 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Seca12g02011 250 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02011 Seca-Chr12 24341028 24341780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02011 66 246 AP2-EREBP Transcription Factor Family AT2G44940 51.691 2.79e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca12g02011 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02011 - - gmx:100101914 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02011 12 24341028 24341780 Seca12g02011 12 24341028 24341780 PCT