Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02005 ATGGCACCCAGGAATGATGGACCAACTAAGAAACCAATGAATAGAGGAGCATGGACCCCAGAGGAAGATCAAAAGCTAGCCAAATGCATTGAAATTCATGGGCCAAAGAGGTGGAAGACTGTTGCTGTCAAATCAGCAGGTTTAAATAGGTGTGGAAAGAGTTGCAGGCTGAGATGGTTAAACTATCTTAGACCCAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTCAATCACAAAGAGGTAAAACCAGAAACTTCCATGGCACAAGAAACTACAACCCACAACCAGATTGCTGGAGACAGTGCCATGTTAGAAAGTAAAGAGACCATTAATGGAAGTAGTAACCCAGATGTTAGCTTTGATGTGAACGAATTCTTCAATTTTGCCAGTGAAGGACCCTATGGGTTTGATTGGATGAACAAGTACTTAGAATTTGATCAGATTCCTGACAACACAAATTTGTTCTGA 594 0.4091 MAPRNDGPTKKPMNRGAWTPEEDQKLAKCIEIHGPKRWKTVAVKSAGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNHKEVKPETSMAQETTTHNQIAGDSAMLESKETINGSSNPDVSFDVNEFFNFASEGPYGFDWMNKYLEFDQIPDNTNLF. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02005 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 139 - -
Seca12g02005 197 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Seca12g02005 197 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Seca12g02005 197 SMART sant 68 116 IPR001005 -
Seca12g02005 197 SMART sant 14 65 IPR001005 -
Seca12g02005 197 FunFam transcription repressor MYB5-like 73 139 - -
Seca12g02005 197 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Seca12g02005 197 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Seca12g02005 197 CDD SANT 73 114 IPR001005 -
Seca12g02005 197 FunFam MYB-related transcription factor 14 68 - -
Seca12g02005 197 CDD SANT 17 63 IPR001005 -
Seca12g02005 197 Gene3D - 9 69 - -
Seca12g02005 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Seca12g02005 197 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Seca12g02005 197 Gene3D - 72 142 - -
Seca12g02005 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02005 Seca-Chr12 24218852 24219934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02005 9 187 MYB Transcription Factor Family AT3G13540 47.120 7.05e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g02005 Myb_DNA-binding 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02005 K09422 - gmx:100799575 303.523