Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01983 ATGAAGCAAGTAAGGGAGGCTAGGTTTGAGGTTGAGCCTGATGATAAGCATGATGTGATGGGTGTTATGTCGGTTTTGACCCAGTTTGAGAATCGGGTTGCTCCGAATGAGGGTGATCTGAAGCAGGTTCTTGATTATATTGGGGTTTTGGGGTGGAGTGAGTGTAATAAAGAGGTGAAGTTTTTAGATGCTGATATTGGGTTTGAGTGCTTGAATGACAGTTTGATGGGGTTCATGAGTTACTGTAGATGTGTGGTTTTGGAAGTTGTAGATAGTGAAATTTGTGATAAAAAATCCGATGCAAGCAGAGAAAGCATGAATGAAAATGAGGTTATTCTGAGTTGTGTTAACCCAGATGATTTTCGATGTCCAATCACTTTGGAGCTGATGAGTGATCCAATGACAATAGAGACAGGTCATACTTATGATCATTCCTCAATTCTCAAATGGTTCAGAAGTGGAAATGCAATTTGTCCCAAAACAGGTAAAAGGCTTAGCAGCATTGAACTGGTACCCAACTTGATTCTACGGAGGTTGATTCAGCAATATTGCATTGCCAATGGAATTCCTTTTGCTGATCTGGGTCGTAGGAATCGTGACATCACAAGGACTGTGCAGCCAGGAAGTGTGGCAGCAGAGGAAGCCATGAAAATGTTAGCTGGTTTTCTTTGCAAAATATTTGAGAATGGCACTGTGGAGGAGAAGAACCGAATTGCGTTTGAAATGAGGCTTCTTTCTAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGTTGGTTCAATTCCTCTTTTGTTGAAGTTGTTATCATCAAGAGACTCATCAACACAAGAGAATGCAGTTGCAGCCCTTTTGAAACTCTCAAAATACCCCAAAAGTAGAGCTGAGATGGTTCAGAATTGGGGGTTAGATTTGATTATTGGGGTCTTAAAGAAGGGCTAA 942 0.4076 MKQVREARFEVEPDDKHDVMGVMSVLTQFENRVAPNEGDLKQVLDYIGVLGWSECNKEVKFLDADIGFECLNDSLMGFMSYCRCVVLEVVDSEICDKKSDASRESMNENEVILSCVNPDDFRCPITLELMSDPMTIETGHTYDHSSILKWFRSGNAICPKTGKRLSSIELVPNLILRRLIQQYCIANGIPFADLGRRNRDITRTVQPGSVAAEEAMKMLAGFLCKIFENGTVEEKNRIAFEMRLLSKTSIFSRSCLVEVGSIPLLLKLLSSRDSSTQENAVAALLKLSKYPKSRAEMVQNWGLDLIIGVLKKG. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01983 313 SMART Ubox_2 120 183 IPR003613 GO:0004842|GO:0016567
Seca12g01983 313 Pfam U-box domain 118 186 IPR003613 GO:0004842|GO:0016567
Seca12g01983 313 Gene3D - 204 313 IPR011989 -
Seca12g01983 313 PANTHER U BOX DOMAIN-CONTAINING 36 313 - -
Seca12g01983 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Seca12g01983 313 Pfam Armadillo/beta-catenin-like repeat 253 288 IPR000225 GO:0005515
Seca12g01983 313 SUPERFAMILY ARM repeat 222 310 IPR016024 -
Seca12g01983 313 FunFam RING-type E3 ubiquitin transferase 117 189 - -
Seca12g01983 313 ProSiteProfiles U-box domain profile. 116 190 IPR003613 GO:0004842|GO:0016567
Seca12g01983 313 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 260 302 IPR000225 GO:0005515
Seca12g01983 313 SUPERFAMILY RING/U-box 117 191 - -
Seca12g01983 313 CDD RING-Ubox_PUB 118 170 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01983 Seca-Chr12 23850498 23851467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01983 1 313 U-box Gene Family AT1G10560 39.571 6.83e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01983 - - gmx:100795816 411.379