Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01981 ATGTCCTCTCTTGATGGAAGACTGAGAGGCATTTTGATTTGTTTGAAAGAAAAGGTGAAAATGGTGGGGATGATGAGGAATTCTGGAATGATGGAAGATGTGGTCATAATTGGAGGGTTGATTGGAGTGCAATTTGTTTATGCAGGGAATGCTCTGCTGCTGAGTTATCTTATGTCTTTGGGCCTAACCTCTTTCACCATTGTCATTTTCACTTCCTTTGCTACATTCCTCATTGTCCTCCCTCTTGCCTTTTATTATGAAAGGTATAAATGGCCAAAGAAACTCAGTTTCAAGCTGGTTATGCAGTTTCTGTTTCTTTCATTTGGAGGTGTAACTTTGTTCCAGTCTTTATTCCTTAAAGGAATCAATCTAACCTCACCATCAATGGGAACTGCCATGCCAAACCTTGCCCCAGGCCTCATCTTCATCATAGCATGGATTTTTCGGTTGGAAAAAGTCAACTTAAGGTGCACATATAGTAGAGTAAAAATCATTGGTACATTGCTTTGTGTCTTGGGGGCTTTCACAATGAGCATAATGCAAAGCATCTCTATAACTGCACCCTCTAAAGAAGCTACATTGCAATTATCATCTCCACCACCAGTTGTGATGTTTGACAGAGAGAAGATATTTGGTTGCCTCTATCTCTTGGCATCGATCTTCATATTATCAGGCAATGTTGTCCTGCAGGCTTTTACTCTAGGAGATTTTCCTGCACCAATGTCCTTGTGTGCAGTAACATCCTTTTTGGGGGGTTTCATTACTGCAACAGCACAACTACTACAGGATCATGAATTCAAAACTGGTTGGCCATTACTGAGTATTGGAGACTTGATTGGCTATTCTCTCCTGGTAGGTGCAGTGAGTGGAATATGCTTAAGCTTCAATGGTTGGGCAATTGAGAAGAGAGGGCCAGTATTGGTGTCCATGTTCAGCCCCATCGCAACAGTGTGTTCTGTCATTTTCTCAGTTGTTACTCTAGGAGACACCATCAATATTGGAAGCTTTGTGGGTATGTTCCTCATGTTCGCTGGGCTTTACTTTGTGCTTTGGGCCAAAGGGAAAGAAGGATACACACATGGAATTGGCTTAGAGAGTGAGTTTGACATAGAGAAGCCTCTTTTAAGTTGA 1131 0.4173 MSSLDGRLRGILICLKEKVKMVGMMRNSGMMEDVVIIGGLIGVQFVYAGNALLLSYLMSLGLTSFTIVIFTSFATFLIVLPLAFYYERYKWPKKLSFKLVMQFLFLSFGGVTLFQSLFLKGINLTSPSMGTAMPNLAPGLIFIIAWIFRLEKVNLRCTYSRVKIIGTLLCVLGAFTMSIMQSISITAPSKEATLQLSSPPPVVMFDREKIFGCLYLLASIFILSGNVVLQAFTLGDFPAPMSLCAVTSFLGGFITATAQLLQDHEFKTGWPLLSIGDLIGYSLLVGAVSGICLSFNGWAIEKRGPVLVSMFSPIATVCSVIFSVVTLGDTINIGSFVGMFLMFAGLYFVLWAKGKEGYTHGIGLESEFDIEKPLLS. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01981 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 274 354 - -
Seca12g01981 376 Pfam EamA-like transporter family 41 178 IPR000620 GO:0016020
Seca12g01981 376 Pfam EamA-like transporter family 211 350 IPR000620 GO:0016020
Seca12g01981 376 PANTHER WAT1-RELATED PROTEIN 39 357 IPR030184 GO:0016020|GO:0022857
Seca12g01981 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 79 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01981 Seca-Chr12 23811835 23816174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01981 9 360 Nodulin-like Gene Family AT5G47470 58.640 1.04e-145 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01981 - - gmx:100809182 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01981 12 23811835 23816174 Seca12g01981 12 23811835 23816174 PCT