Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01980 ATGGAAAGGCACAAATGCAAGCTATGTTCAAGGACATTTGCCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCACCTTGCCACCCTTCCCCTGCCTCCAAAGCCTGAACCTTTCAATGAGTCTGTTTTCTTTTCATTTTCCTCTTCTGAATCAGAAGAAGAAGAATCAGAAGAAAAGGCTCTGGTTTATGGGTTGAGGGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAATTTTCTTTAGCACCTGATACTGGGTTTGTGGTCCAAGACAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACAGAAAGTCTAGCTTAATGGGTAGCCAGAACCAGAATTTGGAATCCAAGAAACCCAAGTTGAGTTTCATGGTGTCAACACCACCACCACCATCCACAGAGCCAGAGCCTTTGAGTTCTGTTTCTGACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTGTCAAGGGACAAGTGGAGGAGGAAGAACAATGGTGTGGAAGTGGAACAACAAGGTTGTATTCAGCAAGAAGAAGAAGAAGAAAGGGTGGAGAAAAATTCAAAGGGATGCAACAAAGAGATCAAGTTGAAGAGAGTTAGAGGGAAACACTTGTGTGACAATTGTGGGAAAACTTTTAGATCTTCTAGAGCATTGGGAAGTCATAAAAGTGTTTGCTGTCAAAGAGGTGAAGGGAATGGCAATGACAAGATTTTTGAATGCCCTTTTTGTTTCAAAGTGTTTGGGTCAGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTCATTCCTTCTTCATCATCAATAGCTAATGTTGATTCTGTTAGATTGAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCACTTGAAGAAGATGACCTCAGTGTTGTTTCTGATGCGTAA 942 0.4352 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPFNESVFFSFSSSESEEEESEEKALVYGLRENPKKSFRLADPEFSLAPDTGFVVQDRESETESKNPTRQRSKRNRKSSLMGSQNQNLESKKPKLSFMVSTPPPPSTEPEPLSSVSDTSPEEDVAMCLMMLSRDKWRRKNNGVEVEQQGCIQQEEEEERVEKNSKGCNKEIKLKRVRGKHLCDNCGKTFRSSRALGSHKSVCCQRGEGNGNDKIFECPFCFKVFGSGQALGGHKRSHLIPSSSSIANVDSVRLKESFIDLNLPAPLEEDDLSVVSDA. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01980 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 216 245 IPR013087 -
Seca12g01980 313 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 313 IPR044303 GO:0006355
Seca12g01980 313 SMART c2h2final6 216 236 IPR013087 -
Seca12g01980 313 SMART c2h2final6 251 273 IPR013087 -
Seca12g01980 313 SMART c2h2final6 4 26 IPR013087 -
Seca12g01980 313 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Seca12g01980 313 Gene3D Classic Zinc Finger 213 273 - -
Seca12g01980 313 SUPERFAMILY beta-beta-alpha zinc fingers 216 273 IPR036236 -
Seca12g01980 313 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca12g01980 313 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Seca12g01980 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 273 IPR013087 -
Seca12g01980 313 MobiDBLite consensus disorder prediction 113 130 - -
Seca12g01980 313 MobiDBLite consensus disorder prediction 85 156 - -
Seca12g01980 313 Pfam C2H2-type zinc finger 216 235 - -
Seca12g01980 313 Pfam C2H2-type zinc finger 3 28 - -
Seca12g01980 313 Pfam C2H2-type zinc finger 251 274 - -
Seca12g01980 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01980 Seca-Chr12 23781882 23782823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01980 1 310 C2H2 Transcription Factor Family AT3G60580 37.838 1.24e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g01980 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01980 - - gmx:100815124 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01980 12 23781882 23782823 Seca12g01980 12 23781882 23782823 PCT