Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01964 ATGTATCTATCTTCCATAGCTTCTCTGTTCCCCAAAACCCTAACTGCCATTCCTTTCCTTCACCGAACTCGAACTCGAACTCATTCTCCAAAACTAAACGCTATTCGAACTATGAGTTCCGGTTCCACCCAGCGTATCTTCCAGCTCAAGCTTGACCCGCTAACCGGTACCTCTGAATGGGTAGTCATCGAAGAAGAAGACGACGATCAAAGCTTCACCGAGAATTTCCACCAGCCTCTTCTCGCAACGACGTCGTATTTGGACATGCTCAATGACTCCGCCAGAAACAGAGCATTTCGCGAAGCCATTGAGAAAACCATCACCAAACCTTGCCATGTTCTTGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCGCGAGCTATGGGTGGCAAAGGGACGGTAACGGCGTGTGAGTCTTATCTCCCGATGGTGAAGTTGATGAAGAAGGTGCTGCGCCTTAATGGGATGGAAGGAAGAATCAAAGTCATCAACAAACGCTCTGATGAACTCAAACTTGGCCTTGATATCCCTTCACGTGCAGATGTTCTTGTAAGCGAGATACTAGATTCAGAATTACTTGGTGAGGGGCTTATACCTACCTTACAACATGCGCATGATAGTTTGTTGGTGGAAAACCCTCTCACTGTGCCATATCGAGCAACTACATATGGACAGCTGGTTGAAAGCAAATTCTTGTGGCAGCTGCATGATTTGCATAACAATGAGGCTGGTGCATCTGATGGCATTTGTCTTACCCCTCCGGGACTTGATAGTGTTTTAAGTGTCAAACGTCAGCAATATGCCATGCATTGTGATCCGATAGGAGAAGAAATAAAACCACTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTAATGGAGAAACTGAGCTGTGCATAAAGGCAACTAATGATGGTAGAGTTCATGCTGTCATATCTTGGTGGGTACTCCAACTTGATCATGAAGGGACAATCTATTATTCCACTGCTCCTAGATGGATAAACTCACCAACAATTAAAAGTGAGGGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGCAGTGGCATTTCCACATTCAAAGGGGAAGAAATTTATTTACATGCTACTCATACTGATACTAGTATATCATATAATTTATATTCGCAAGCACCAACGGCCGAGGTTGTACATCATGGGTTGAGGACTGGAGATTTGCAGCTTGTACTGCCACTAGAACGGGCTGCTATCTATGGAGACAGAGGATGGATGCTTTCAATGTTGAAAGCACTAGAAAGTGTGTTGCAGGGGAGAGATTGCTCATTATGCATGGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACATCTTTCCGAAACACCACACATAATATCATTACTTCCAGGGCTAAAGGAAAGGGGTCTCCAATATTTGCAAGCTGCTGCCCAAGCAAATCGTTTATCACCTAATTGCATAGAAGTTCTTGAAAAAAGGGTGAAACAGTTAACCATGCATGATACAAATCAGAAAAAGGTTGATCTGTTAATAGCAGAACCTTTCTATTTTGGACATGATGGCATGCTTCCATGGCAGAACCTGCGATTTTGGAAGGATCGTACAACACTTGATCATATCCTCTCTGAAGATGCTCTGATAATTCCTAGTAAAGGAATATTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTGCTGCTTGAGTAAGATAGAAGGTTTTGACCATTCAGTGGTAAATACCACATTGGGGGCTTGCGGTCATCTACTTGAATTGGAAGGGGGTCCTTGTCTGCCTTTTTCTGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAGATATGCCAATGTCAAGGAAAATCCCAGGTTAAATTCACCAAGACTGGGGTTTGTCATGGGTTTGTACTATGGATTGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGATAAGAGATATTGGAAGCAGGGAATAAAGCTTCTTGTAACACCTAAAACAGTAGGACCCCAAAGGTCGAGAGATGTCCAAGCATGTTGTTCTGCAGTTCTTGAAGCATTTTTTAATCCGTTAAAGGGGGAACTCAAAATTATACATGATTTCTTATGA 2211 0.4297 MYLSSIASLFPKTLTAIPFLHRTRTRTHSPKLNAIRTMSSGSTQRIFQLKLDPLTGTSEWVVIEEEDDDQSFTENFHQPLLATTSYLDMLNDSARNRAFREAIEKTITKPCHVLDIGAGTGLLSMMAARAMGGKGTVTACESYLPMVKLMKKVLRLNGMEGRIKVINKRSDELKLGLDIPSRADVLVSEILDSELLGEGLIPTLQHAHDSLLVENPLTVPYRATTYGQLVESKFLWQLHDLHNNEAGASDGICLTPPGLDSVLSVKRQQYAMHCDPIGEEIKPLSEPFKIFEFDFWKRPESNGETELCIKATNDGRVHAVISWWVLQLDHEGTIYYSTAPRWINSPTIKSEGPVDWCDHWKQCVWFVPGSGISTFKGEEIYLHATHTDTSISYNLYSQAPTAEVVHHGLRTGDLQLVLPLERAAIYGDRGWMLSMLKALESVLQGRDCSLCMVADDSVFLPLLVAHLSETPHIISLLPGLKERGLQYLQAAAQANRLSPNCIEVLEKRVKQLTMHDTNQKKVDLLIAEPFYFGHDGMLPWQNLRFWKDRTTLDHILSEDALIIPSKGILRACAIYLPDLWKSRCCLSKIEGFDHSVVNTTLGACGHLLELEGGPCLPFSVWQCGEFDVLSETFDVMEFDFSKQICQCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDKRYWKQGIKLLVTPKTVGPQRSRDVQACCSAVLEAFFNPLKGELKIIHDFL. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01964 736 Gene3D Vaccinia Virus protein VP39 79 221 IPR029063 -
Seca12g01964 736 Gene3D Vaccinia Virus protein VP39 416 564 IPR029063 -
Seca12g01964 736 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 397 736 IPR025799 GO:0016274|GO:0018216
Seca12g01964 736 FunFam Protein arginine N-methyltransferase 1.6 222 410 - -
Seca12g01964 736 Gene3D - 568 735 - -
Seca12g01964 736 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 65 396 IPR025799 GO:0016274|GO:0018216
Seca12g01964 736 FunFam Protein arginine N-methyltransferase 79 221 - -
Seca12g01964 736 PIRSF Arg_N-mtase 44 734 IPR014644 GO:0006479|GO:0008168
Seca12g01964 736 FunFam Protein arginine N-methyltransferase 1.6 568 735 - -
Seca12g01964 736 Pfam Ribosomal protein L11 methyltransferase (PrmA) 101 193 - -
Seca12g01964 736 FunFam Protein arginine N-methyltransferase 7 414 564 - -
Seca12g01964 736 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 485 702 IPR029063 -
Seca12g01964 736 CDD AdoMet_MTases 113 188 - -
Seca12g01964 736 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 487 704 IPR025799 GO:0016274|GO:0018216
Seca12g01964 736 Gene3D - 222 408 - -
Seca12g01964 736 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 395 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01964 Seca-Chr12 23580620 23589959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01964 70 226 C2H2 Transcription Factor Family AT3G12270 30.723 1.16e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01964 K11438 - gmx:100785846 1263.44