Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01942 ATGGAATCTGTTAATGGCAATGAAGATCCTGTTGTCAATGAGACGAGCAATAATGATACACATGCTGGTGATTTAGAGGATAAAGGTGGTCAAGAACCGTTCATTGGAATGGAATTTCATCGCCGTTCAAAAGTTTCTAGAGATTTCATTGATGTGAAATATGCTTGCACAAGATATGGGAAGAAACGAGAATCCACAACACTTAATCCACGTCCTTGTTTCAAGGTCGAATGTAAAGCTACTTTACGCATTAAAAGGAGCTGTAATGGAAAATGGGTTCTTCATAGCTTCATCAAGGATCACAATCATGAGCTTTTTTCGACATATGCACATTATTTTCCTTGCCACAGAGGCATCAATCAAGCTCAAAAGCAATACATTGAAACTTTGCAGCATGTTGGAGTGAGAACAAGAAAAATTTATGCCACGATGGCCAAACAACATGGAGGATATGAAAACATTGGCTGCTTGGAGAAAGATATTAGAAATCAATTGGATAAGGGTCGTTGTTTGGCTTTTGAGTCAGGAGATGCAAATGTAATGCTGGAATGTTTTATGCTCATGCAAGAAGAAAATCCAAGATTCTTTTATGCAATTGATTTGGATGATGAAGATCGTGTGAAAAATATATTTTGGGTGGATGCAAAAGGTAGAGATGACTATGAAGAGTTTGGAGATGTAATTTCATTTGATACAACATACATCACAAATAAGTATAAAATGCCATTTGCTCCATTCATTGGGGTGAATAATCACTTTCAGTCAAGATTACTTGGTTGTGCATTACTAGCAGACGAGTCTTCAAAAACCTTCACATGGTTGATGAAAAAATGGCTTATAGCTATGGGTGGCAAGCCTCCAAGTGCAATAATTACAGATCAAGATAAAGCAATGAAATCAGCTATTAAAGAGGTATTTCCAAGTGCTCGACATCATTTTTGTCTTTGGCATATACTGAGAAAGGTACCCGAGAAGCTTAGTCATGTATTAAGAAAACATGAAGATTTCATGACATTTCTTAACTCATGCATTTACAAGTCTTGGTCAAAGAAGCAATTTGAAGACACATGGCAGGAAATGGTTGAAAAATTTGAACTATTGGAGGATGGATGGATTCAATCTTTATTTGAAGAACGTGAGCATTGGGTTCCTGTTTACATGAAGGATACATTTTTTGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCATTTTTTGACAAATATGTAAGTAAAAAAACTTCATTGAAGGAATTCATTGAAAAATATAAAGTTGCTTTACAAGATAGAGAAAAGGCAGAAATGCAAGCTGATTTTAATACATGGCATAAGCAACCTGTTCTTAAGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTCCAAGTTGAAGTGTTAGGATTATCTGGATGTCATTTCATGACAAAGACTGAAAATGGTCAAATTACCACTTTTAAAATCCTAGACTTCCAGAAAGATGAAGAGTTTGTTGTAGAGTGGGATGCATCAAAAGCAGGAATTTCTTGCTTATGTCGTTTATTTGAGTATAATGGATTTCTTTGCAGACATTCATTAATGGCATTCCAAGTTGTTGGTGTCTTTACTGTCCCGTCAAGTTATATATTGAGAAGATGGACCAAAGATATTAGAAGCAAGCATCTTAAAAGAAAAATGAATGACAATGCCTGTACCAAAAAGGAGAGATATGATCACTTATATCAAAAGGCCTTTCAATTGCTTGAGGAAGGATCATTAAGTAATGAGAGTTTCAATTTTGCAAGTCATGCACTCGAAGAGACCTTCAAACGATGTGCAAGCATAAACCAATCTTTGAAAATTGACAGAGAAACAGTTGGTAAGAACATTTTACATGAGAAACCATTACTTGATCCTATAGTTTCAAAAACAAAAGGGGCCCCAAGAAGAATAAAGAGTGGGATTGAGAAAGGTCATAAGAGAACATCAAGTGGTAAAGTGAAAAAGTCTGGATTTACTGAAAAGAAGCAAAGAGTACACATGATGTTCTTAATGATGAATTGGTGGCTGCATCAATAA 2088 0.3558 MESVNGNEDPVVNETSNNDTHAGDLEDKGGQEPFIGMEFHRRSKVSRDFIDVKYACTRYGKKRESTTLNPRPCFKVECKATLRIKRSCNGKWVLHSFIKDHNHELFSTYAHYFPCHRGINQAQKQYIETLQHVGVRTRKIYATMAKQHGGYENIGCLEKDIRNQLDKGRCLAFESGDANVMLECFMLMQEENPRFFYAIDLDDEDRVKNIFWVDAKGRDDYEEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADESSKTFTWLMKKWLIAMGGKPPSAIITDQDKAMKSAIKEVFPSARHHFCLWHILRKVPEKLSHVLRKHEDFMTFLNSCIYKSWSKKQFEDTWQEMVEKFELLEDGWIQSLFEEREHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVSKKTSLKEFIEKYKVALQDREKAEMQADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEVLGLSGCHFMTKTENGQITTFKILDFQKDEEFVVEWDASKAGISCLCRLFEYNGFLCRHSLMAFQVVGVFTVPSSYILRRWTKDIRSKHLKRKMNDNACTKKERYDHLYQKAFQLLEEGSLSNESFNFASHALEETFKRCASINQSLKIDRETVGKNILHEKPLLDPIVSKTKGAPRRIKSGIEKGHKRTSSGKVKKSGFTEKKQRVHMMFLMMNWWLHQ. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01942 695 ProSiteProfiles Zinc finger SWIM-type profile. 507 543 IPR007527 GO:0008270
Seca12g01942 695 MobiDBLite consensus disorder prediction 1 31 - -
Seca12g01942 695 MobiDBLite consensus disorder prediction 654 674 - -
Seca12g01942 695 Pfam MULE transposase domain 227 320 IPR018289 -
Seca12g01942 695 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 616 IPR031052 GO:0006355
Seca12g01942 695 SMART 26again6 518 545 IPR006564 GO:0008270
Seca12g01942 695 Pfam FAR1 DNA-binding domain 38 106 IPR004330 -
Seca12g01942 695 Pfam SWIM zinc finger 515 541 IPR007527 GO:0008270
Seca12g01942 695 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g01942 695 Coils Coil 418 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01942 Seca-Chr12 23301086 23303974 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g01942 MULE 3.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01942 - - mtr:112418473 1044.26