Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01916 ATGGATTTGAAGTCCTCTCATGCTTCTCCTATTCTTACTGATCCTGTTTCCATCAACAAGTCAAGGCTTGGAATCCGTTCTAATCTGCGAGCTTATTCCCAACAAGATTCATCACTCTCTCCAGCGAAGTACACAAAAAGCAATTCAAGGAAAAGTACAGGGAGTCTTGATGATGTTAGGCATAATGGTTGGTTGGATGCCATGAAGGCCTCTTCACCTCCAAGGAAGAAGCTACTTAAAGGTTCCAGTGCTCAGGTTGCTTCAATTGATTATGACATTGAAGACTATAATTCATGGACACTGGGATATCCTTCAGCACTAGACTCTTTTGAGGAAATTATTGACCGTGCAAAGAATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCTCCAATAGTAGATGATCCAGATTGTGCCTTTATGTCTGAATCTATGCGTGCAACTGTGAGAAAAGTAGCAAAATATTTCCCTACAGCAATAATCAGCGGAAGAAGCCGTGACAAGGTTTTTGAATTAGTTAAACTGACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAATGACACTCTGTCCAAAGTCCATCCGAATTGTGCCAAGTCTACCGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGTGAATTCCTCCCTATGATTGATGAGGTTTTTAGAACCCTCATCGAGATTACTAGAGATATAAAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTATCGTAATGTAGAAGAGAATAATTGGACAACGATTGGTCAACGTGTCCATGATATCTTAAAAAATTACCCTCGTTTATGTTCAACTCATGGACGGAAGGTTTTAGAAATTCGTCCTGTAATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTTTAGGGTTAACAGATAGGAATGATGTTTTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTGTTGCGGGAGAAGAATCAAGGTTATGGAATTTTGGTTTCATCAGTGAGAAAAGAAAGCAATGCCTTCTACTCTCTGCGAGATCCCACTGAGGTTATGAAGTTTCTCCAACTCTTGGTGAATTGGAAGAGGCAACAAGAAAGGAAGCATGGGAAGAAATAA 1179 0.3953 MDLKSSHASPILTDPVSINKSRLGIRSNLRAYSQQDSSLSPAKYTKSNSRKSTGSLDDVRHNGWLDAMKASSPPRKKLLKGSSAQVASIDYDIEDYNSWTLGYPSALDSFEEIIDRAKNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRATVRKVAKYFPTAIISGRSRDKVFELVKLTELYYAGSHGMDIIGPVNDTLSKVHPNCAKSTDHQGKEITLFQPASEFLPMIDEVFRTLIEITRDIKGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDILKNYPRLCSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTDRNDVFPIYIGDDKTDEDAFKVLREKNQGYGILVSSVRKESNAFYSLRDPTEVMKFLQLLVNWKRQQERKHGKK. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01916 392 FunFam Trehalose 6-phosphate phosphatase 122 210 - -
Seca12g01916 392 NCBIfam trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Seca12g01916 392 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Seca12g01916 392 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Seca12g01916 392 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 40 389 IPR044651 GO:0004805|GO:0005992
Seca12g01916 392 MobiDBLite consensus disorder prediction 32 58 - -
Seca12g01916 392 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Seca12g01916 392 Gene3D - 122 213 IPR023214 -
Seca12g01916 392 Gene3D - 222 392 IPR023214 -
Seca12g01916 392 SUPERFAMILY HAD-like 123 383 IPR036412 -
Seca12g01916 392 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Seca12g01916 392 CDD HAD_TPP 123 373 - -
Seca12g01916 392 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01916 Seca-Chr12 22690483 22696238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01916 118 378 Trehalose Biosynthesis Gene Families AT1G70290 26.449 9.98e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01916 K01087 - zju:107430298 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01916 12 22690483 22696238 Seca12g01916 12 22690483 22696238 ECH